Merge remote-tracking branch 'origin/master' into core-updates

author: Andreas Enge <andreas@enge.fr> 2023-04-17 19:17:39 +0200
committer: Andreas Enge <andreas@enge.fr> 2023-04-17 19:17:39 +0200
commit: 216d7bdb738e05675bbb128d582851bdc9b85aaa (patch)
tree: 0535efa1427ebc5b14ac10ccf03be17673a8c909
parent: d3c7ca3c40fd613cfb3fb8f41e8ea064b438414a (diff)
parent: 50dd91bc30634c75c0001cfd38bbcc2fbbeb894e (diff)
23 files changed, 593 insertions, 365 deletions
diff --git a/gnu/local.mk b/gnu/local.mk
index 73756a8c49..9372ff0119 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1828,7 +1828,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/racket-zuo-bin-sh.patch			\
   %D%/packages/patches/remake-impure-dirs.patch			\
   %D%/packages/patches/restic-0.9.6-fix-tests-for-go1.15.patch	\
-  %D%/packages/patches/r-mixedpower-r2power.patch		\
   %D%/packages/patches/rng-tools-revert-build-randstat.patch	\
   %D%/packages/patches/rocm-comgr-3.1.0-dependencies.patch 	\
   %D%/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch 	\
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 5185ffd198..1ad3f93dfc 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -35,7 +35,7 @@
 ;;; Copyright © 2020, 2021, 2022 Michael Rohleder <mike@rohleder.de>
 ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com>
 ;;; Copyright © 2020 Morgan Smith <Morgan.J.Smith@outlook.com>
-;;; Copyright © 2021, 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
+;;; Copyright © 2021, 2022, 2023 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;; Copyright © 2021 Zheng Junjie <873216071@qq.com>
 ;;; Copyright © 2021 Stefan Reichör <stefan@xsteve.at>
 ;;; Copyright © 2021 qblade <qblade@protonmail.com>
@@ -2785,13 +2785,13 @@ specified directories.")
 (define-public ansible-core
   (package
     (name "ansible-core")
-    (version "2.11.6")
+    (version "2.14.4")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "ansible-core" version))
        (sha256
-        (base32 "0fih7nxszni8imi5sywsifd976v77ydhip43pzg7dd65qy1h5mck"))))
+        (base32 "057g87smxcn6zc558xk4zr6ga4q8clmkyxghn5gx60a94sy61clh"))))
     (build-system python-build-system)
     (arguments
      `(#:modules ((guix build python-build-system)
@@ -2827,10 +2827,25 @@ sys.argv[0] = re.sub(r'\\.([^/]*)-real$', r'\\1', sys.argv[0])
                                (and (eq? 'symlink (stat:type (lstat x)))
                                     (string-prefix? "ansible-" x)
                                     (string=? "ansible" (readlink x)))))))))
+         (add-after 'unpack 'skip-controller-tests
+           (lambda _
+             ;; XXX: This disables all the controller tests, which fail for
+             ;; unknown reasons, seemingly while attempting to set the
+             ;; locale to en_US.UTF-8.
+             (substitute* "test/lib/ansible_test/_internal/commands\
+/units/__init__.py"
+               (("^            if test_context == TestContext.controller:.*"
+                 all)
+                (string-append all "                continue\n")))))
          (add-after 'unpack 'preserve-pythonpath
            (lambda _
              (substitute* "test/lib/ansible_test/_internal/ansible_util.py"
                (("PYTHONPATH=get_ansible_python_path\\(args\\)" all)
+                (string-append all "+ ':' + os.environ['GUIX_PYTHONPATH']")))
+             (substitute* "test/lib/ansible_test/_internal/commands\
+/units/__init__.py"
+               (("PYTHONPATH=get_units_ansible_python_path\\(args, \
+test_context)" all)
                 (string-append all "+ ':' + os.environ['GUIX_PYTHONPATH']")))))
          (add-after 'unpack 'patch-paths
            (lambda* (#:key inputs outputs #:allow-other-keys)
@@ -2842,18 +2857,10 @@ sys.argv[0] = re.sub(r'\\.([^/]*)-real$', r'\\1', sys.argv[0])
                (("/usr/bin/python")
                 (which "python")))))
          (replace 'check
-           ;; The environment for the test suite can be tricky to get right.
-           ;; The environment used for Ansible's CI defined in the following
-           ;; Dockerfile can be used as a reference:
-           ;; https://raw.githubusercontent.com/ansible/
-           ;; default-test-container/master/Dockerfile.
            (lambda* (#:key inputs outputs tests? #:allow-other-keys)
              (when tests?
                ;; Otherwise Ansible fails to create its config directory.
                (setenv "HOME" "/tmp")
-               (setenv "PATH" (string-append (getenv "PATH") ":"
-                                             (assoc-ref outputs "out") "/bin"))
-               (add-installed-pythonpath inputs outputs)
                ;; This test module messes up with sys.path and causes many
                ;; test failures.
                (delete-file "test/units/_vendor/test_vendor.py")
@@ -2862,11 +2869,23 @@ sys.argv[0] = re.sub(r'\\.([^/]*)-real$', r'\\1', sys.argv[0])
                (delete-file "test/units/utils/test_display.py")
                ;; This test fail for reasons unknown.
                (delete-file "test/units/cli/test_adhoc.py")
+               ;; These tests fail in the container; it appears that the
+               ;; mocking of the absolute file names such as /usr/bin/svcs do
+               ;; not work as intended there.
+               (delete-file "test/units/modules/test_iptables.py")
+               (delete-file "test/units/modules/test_service.py")
+               ;; These tests fail with a "unsupported locale setting" error
+               ;; when invoking 'locale.setlocale(locale.LC_ALL, '')'
+               (delete-file "test/units/module_utils/basic/\
+test_command_nonexisting.py")
+               (delete-file "test/units/module_utils/basic/test_tmpdir.py")
                ;; The test suite needs to be run with 'ansible-test', which
                ;; does some extra environment setup.  Taken from
                ;; https://raw.githubusercontent.com/ansible/ansible/\
                ;; devel/test/utils/shippable/shippable.sh.
-               (invoke "ansible-test" "units" "-v")))))))
+               (invoke "ansible-test" "units" "-v"
+                       "--num-workers" (number->string
+                                        (parallel-job-count)))))))))
     (native-inputs
      (list openssh
            openssl
@@ -2884,7 +2903,7 @@ sys.argv[0] = re.sub(r'\\.([^/]*)-real$', r'\\1', sys.argv[0])
      (list python-cryptography
            python-jinja2
            python-pyyaml
-           python-packaging ;for version number parsing
+           python-packaging             ;for version number parsing
            python-resolvelib-0.5))
     (home-page "https://www.ansible.com/")
     (synopsis "Radically simple IT automation")
@@ -2912,16 +2931,15 @@ provides the following commands:
 (define-public ansible
   (package
     (name "ansible")
-    (version "4.7.0")
+    (version "7.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "ansible" version))
        (sha256
-        (base32 "0aab9id6dqfw2111r731c7y1p77dpzczynmgl4d989p3a7n54z0b"))))
+        (base32 "142barhwz0wx5kn74xi0bfl21iwq2yq3jp14kxajsg9nggndcr09"))))
     (build-system python-build-system)
-    (propagated-inputs
-     (list ansible-core))
+    (propagated-inputs (list ansible-core))
     ;; The Ansible collections are found by ansible-core via the Python search
     ;; path; the following search path ensures that they are found even when
     ;; Python is not present in the profile.
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index 7e125f3f99..e070af956d 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -329,7 +329,7 @@ precision.")
 (define-public giac
   (package
     (name "giac")
-    (version "1.9.0-37")
+    (version "1.9.0-43")
     (source
      (origin
        (method url-fetch)
@@ -341,7 +341,7 @@ precision.")
                            "~parisse/debian/dists/stable/main/source/"
                            "giac_" version ".tar.gz"))
        (sha256
-        (base32 "0ch18wp6b3nr0zg31961rxng2mbw5mj76s00jf5qz7jdxl65s27n"))))
+        (base32 "1fqs9nxjj0kimisfsfhscgzfmc470lyzm63hwla7ka2iqq3s7bp3"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -360,8 +360,8 @@ precision.")
             ;; FIXME: Tests failing.  Not sure why.
             (lambda _
               (substitute* "check/Makefile.in"
-                (("chk_fhan4") "")
-                (("chk_fhan11") ""))))
+                (("chk_fhan(4|11)") "")
+                (("chk_fhan(14|21)") "")))) ;fail specifically on i686
           (add-after 'install 'fix-doc
             (lambda _
               ;; Most French documentation has a non-commercial license, so we
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cb12eba7c5..a986e118f8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9667,6 +9667,78 @@ includes software to
 ")
       (license license:cc0))))
 
+(define-public r-demultiplex2
+  (let ((commit "e42bc8310c0ea035af100e6ccea59b46ad6385f5")
+        (revision "1"))
+    (package
+      (name "r-demultiplex2")
+      (version (git-version "1.0.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/Gartner-Lab/deMULTIplex2")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "15f3kshsdvm97w24ql9b1wjlfbabimdsam0482hg7jivlvpl8j9w"))))
+      (properties `((upstream-name . "deMULTIplex2")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-data-table
+                               r-devtools
+                               r-dplyr
+                               r-ggextra
+                               r-ggplot2
+                               r-gridextra
+                               r-magrittr
+                               r-mass
+                               r-matrix
+                               r-rcolorbrewer
+                               r-shortread
+                               r-stringdist
+                               r-tidyr
+                               r-uwot
+                               r-viridis
+                               r-xvector))
+      (home-page "https://github.com/Gartner-Lab/deMULTIplex2")
+      (synopsis "Robust sample demultiplexing for scRNA-seq")
+      (description
+       "This package implements a bioinformatics algorithm for demultiplexing
+multiplexed single cell datasets.  It is built on a statistical model of tag
+read counts derived from the physical mechanism of tag cross-contamination.")
+      (license license:cc0))))
+
+(define-public r-demuxmix
+  (let ((commit "09a7918ca6e0cd23e6bbaed2b97388bc499e248e")
+        (revision "1"))
+    (package
+      (name "r-demuxmix")
+      (version (git-version "1.1.1" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/huklein/demuxmix")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "03kfnns7m2447jsc3xplyv9qx8hvvdjmii7j837g3bb6smyxss96"))))
+      (properties `((upstream-name . "demuxmix")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-ggplot2 r-gridextra r-mass r-matrix))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/huklein/demuxmix")
+      (synopsis
+       "Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models")
+      (description
+       "This package is used for demultiplexing single-cell sequencing
+experiments of pooled cells.  These cells are labeled with barcode
+oligonucleotides.  The package implements methods to fit regression mixture
+models for a probabilistic classification of cells, including multiplet
+detection.  Demultiplexing error rates can be estimated, and methods for
+quality control are provided.")
+      (license license:artistic2.0))))
+
 (define-public gdc-client
   (package
     (name "gdc-client")
diff --git a/gnu/packages/certs.scm b/gnu/packages/certs.scm
index 6372e7ff08..122882980b 100644
--- a/gnu/packages/certs.scm
+++ b/gnu/packages/certs.scm
@@ -131,7 +131,7 @@ that was originally contributed to Debian.")
     ;; XXX We used to refer to the nss package here, but that eventually caused
     ;; module cycles.  The below is a quick copy-paste job that must be kept in
     ;; sync manually.  Surely there's a better way…?
-    (version "3.82")
+    (version "3.85")
     (source (origin
               (method url-fetch)
               (uri (let ((version-with-underscores
@@ -142,7 +142,7 @@ that was originally contributed to Debian.")
                       "nss-" version ".tar.gz")))
               (sha256
                (base32
-                "0wqmgibacxf5i3jlm8jl50qasv2spwx07ixlscz9byf2f8xnggrj"))
+                "15yj2gddlp68wj1k9q4q70vs6r7zx5qkbavcppmls5di212xdndg"))
               ;; Create nss.pc and nss-config.
               (patches (search-patches "nss-3.56-pkgconfig.patch"
                                        "nss-getcwd-nonnull.patch"
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1be553149c..07ce0824cb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1409,14 +1409,14 @@ similar rank-based tests for equal probability distributions due to Neuhauser
 (define-public r-v8
   (package
     (name "r-v8")
-    (version "4.2.2")
+    (version "4.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "V8" version))
        (sha256
         (base32
-         "0friwpw3cbg40hfsqnlp8g3a6l4zhfag6lh005ya6dw634kkarah"))))
+         "1l70vdqcagp9cdyxa231gk33z5blsg96j0l28zbaklnhmr7mqfby"))))
     (properties `((upstream-name . "V8")))
     (build-system r-build-system)
     (arguments
@@ -1712,13 +1712,13 @@ proposals for count data.")
 (define-public r-zoo
   (package
     (name "r-zoo")
-    (version "1.8-11")
+    (version "1.8-12")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "zoo" version))
               (sha256
                (base32
-                "19cw09bhwj2qyd72765ym1cm2wmhh801ccif889nzq5gfpw513l4"))))
+                "1f1g7f362sidh99n2pcgnj8iwsn7hnjgpdnkrqml5qzrd0k8dhz6"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-lattice))
@@ -5186,13 +5186,13 @@ initiative to bring PASSTEC 2000 functionalities to R.")
 (define-public r-partykit
   (package
    (name "r-partykit")
-   (version "1.2-19")
+   (version "1.2-20")
    (source (origin
              (method url-fetch)
              (uri (cran-uri "partykit" version))
              (sha256
               (base32
-               "0ma3haanf5pkj8r8q3bd0ig3zq9ppfjhhfkh6v50m82z6fprm3p4"))))
+               "1np0sa7fx7wvwxbpk5lpgbdpz0xwcvppq0sc52nifx1dxnirll33"))))
    (build-system r-build-system)
    (propagated-inputs
     (list r-formula
@@ -6698,6 +6698,41 @@ functions from LINPACK.")
     ;; Any GPL version.
     (license (list license:gpl2+ license:gpl3+))))
 
+(define-public r-littler
+  (package
+    (name "r-littler")
+    (version "0.3.18")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "littler" version))
+              (sha256
+               (base32
+                "1lp6a62g3yhzr4pv9kynibv7k9pd546w6hifs1aficyxbyg4dgqq"))))
+    (properties `((upstream-name . "littler")))
+    (build-system r-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'install 'install-executable
+            (lambda _
+              (install-file "inst/bin/r"
+                            (string-append #$output "/bin")))))))
+    (inputs (list icu4c zlib))
+    (native-inputs
+     (list r-simplermarkdown pkg-config))
+    (home-page "https://github.com/eddelbuettel/littler")
+    (synopsis "R at the command-line via r")
+    (description
+     "This package provides a scripting and command-line front-end is provided
+by r (aka littler) as a lightweight binary wrapper around the GNU R language
+and environment for statistical computing and graphics.  While R can be used
+in batch mode, the r binary adds full support for both shebang-style scripting
+(i.e. using a hash-mark-exclamation-path expression as the first line in
+scripts) as well as command-line use in standard pipelines.  In other words, r
+provides the R language without the environment.")
+    (license license:gpl2+)))
+
 (define-public r-fitdistrplus
   (package
     (name "r-fitdistrplus")
@@ -7801,14 +7836,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.")
 (define-public r-jomo
   (package
     (name "r-jomo")
-    (version "2.7-5")
+    (version "2.7-6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "jomo" version))
        (sha256
         (base32
-         "05xfkj65nqd987pp5bhl4jy46qxwjll5mxnjii6qrmfmjld177q5"))))
+         "1np2sw0kq21kdhkv227pz2rqvpxg06r3mk93ggkrz5nl45ajmyiz"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-lme4 r-mass r-ordinal r-survival r-tibble))
@@ -9499,17 +9534,17 @@ Fisher's method), and Sidak correction.")
 (define-public r-quantmod
   (package
     (name "r-quantmod")
-    (version "0.4.21")
+    (version "0.4.22")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "quantmod" version))
        (sha256
         (base32
-         "1qmpdk91smiqg63h4jsrw4izl4pnbgwlzi16zjvin0fs29kx01jf"))))
+         "0pknwssha01hjsf3c7lgrabk2c3rzq5wa2m7mf8sz7wsrbqrd57j"))))
     (build-system r-build-system)
     (propagated-inputs
-     (list r-curl r-ttr r-xts r-zoo))
+     (list r-curl r-jsonlite r-ttr r-xts r-zoo))
     (home-page "https://cran.r-project.org/web/packages/quantmod/")
     (synopsis "Quantitative financial modelling framework")
     (description "This package provides a quantitative financial modelling
@@ -11401,14 +11436,14 @@ those searches and pull data into their R sessions.")
 (define-public r-renv
   (package
     (name "r-renv")
-    (version "0.17.2")
+    (version "0.17.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "renv" version))
        (sha256
         (base32
-         "1qar7s3zdnhqsi6am6f58wg3ygpwv73qmrcp36glz0galzigc0y2"))))
+         "1w7mwk3drf3bzfyhsy6mlnpbhgp8il8is7q95ad567ry4g6jhkqw"))))
     (properties `((upstream-name . "renv")))
     (build-system r-build-system)
     (native-inputs
@@ -12635,6 +12670,29 @@ documents.")
 libxlsxwriter.")
     (license license:bsd-2)))
 
+(define-public r-writexls
+  (package
+    (name "r-writexls")
+    (version "6.4.0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "WriteXLS" version))
+              (sha256
+               (base32
+                "1dqr98kx930y6mcvb9b39xiwshhs250gkd2vw2v6iil34sl90jv4"))))
+    (properties `((upstream-name . "WriteXLS")))
+    (build-system r-build-system)
+    (inputs (list perl))
+    (home-page "https://github.com/marcschwartz/WriteXLS")
+    (synopsis "Create Excel 2003 (XLS) and Excel 2007 (XLSX) files")
+    (description
+     "This package provides a cross-platform Perl-based R function to create
+Excel 2003 (XLS) and Excel 2007 (XLSX) files from one or more data frames.
+Each data frame will be written to a separate named worksheet in the Excel
+spreadsheet.  The worksheet name will be the name of the data frame it
+contains or can be specified by the user.")
+    (license license:gpl2+)))
+
 (define-public r-biasedurn
   (package
     (name "r-biasedurn")
@@ -13657,14 +13715,14 @@ subsequence} (LCS) using a dynamic programming algorithm.")
 (define-public r-labelled
   (package
     (name "r-labelled")
-    (version "2.10.0")
+    (version "2.11.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "labelled" version))
        (sha256
         (base32
-         "02n4r4bizsysnlmxpw86w7zkiqi6aill9dq2nmrn43xzrffy54sy"))))
+         "1pg5l2c3ai8gkrqryq5xzsal85pljmdzc2ln8k1ak3j4racm5p7d"))))
     (properties `((upstream-name . "labelled")))
     (build-system r-build-system)
     (propagated-inputs
@@ -13688,13 +13746,13 @@ haven package.")
 (define-public r-ggformula
   (package
     (name "r-ggformula")
-    (version "0.10.2")
+    (version "0.10.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggformula" version))
        (sha256
-        (base32 "0xb39gjn6q7va1d1fhvf2dw9428s1q13wasx4y3cz2f0lls1r2wl"))))
+        (base32 "07d9sq0dqi0g5x9h58icfk1f4hgg1xz4mhbp2z2rxg9qgs74fvdj"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-ggforce
@@ -14871,13 +14929,13 @@ Hothorn, Westfall, 2010, CRC Press).")
 (define-public r-multcompview
   (package
     (name "r-multcompview")
-    (version "0.1-8")
+    (version "0.1-9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "multcompView" version))
        (sha256
-        (base32 "1rfq9wvvrghq0542ff40wy8vdmsyd8spzz6ihcywcvxdfa8m6g8j"))))
+        (base32 "15vki166n2k4ng72hy62c2mzz18s10h6l6w839qplg0zsplr6f8z"))))
     (properties `((upstream-name . "multcompView")))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/package=multcompView")
@@ -15125,14 +15183,14 @@ differentiation.")
 (define-public r-bayestestr
   (package
     (name "r-bayestestr")
-    (version "0.13.0")
+    (version "0.13.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bayestestR" version))
        (sha256
         (base32
-         "1951zm88qlbmr4ragrzfzgw72awm7mqhh464s6kck0mcx7shas90"))))
+         "0mmnifi3j29qlsj917wbdqpgpk05x3cc7111k842gsv7y34h4ir7"))))
     (properties `((upstream-name . "bayestestR")))
     (build-system r-build-system)
     (propagated-inputs
@@ -15152,14 +15210,14 @@ ROPE percentage and pd).")
 (define-public r-performance
   (package
     (name "r-performance")
-    (version "0.10.2")
+    (version "0.10.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "performance" version))
        (sha256
         (base32
-         "0r9x5pqf1asf0sy0255jv0d4cki4xd5sfp5rl9mldclykpswf022"))))
+         "1l4sr6cgg8rkgs5w98a36n79b1lbg241p60grsnz12hskppa1a6q"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-bayestestr r-datawizard r-insight))
@@ -18014,14 +18072,14 @@ and manipulating sets of ontological terms.")
 (define-public r-gargle
   (package
     (name "r-gargle")
-    (version "1.3.0")
+    (version "1.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gargle" version))
        (sha256
         (base32
-         "02ldshm8phs1ls0djqfprv5yy8i50ijh16y7smkb61wrwd4zr3s2"))))
+         "12s980jfw98czzrxdn83b2blj4qcrkqqmycjplkzvm4mapgiw3wf"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-cli
@@ -18033,7 +18091,6 @@ and manipulating sets of ontological terms.")
            r-openssl
            r-rappdirs
            r-rlang
-           r-rstudioapi
            r-withr))
     (native-inputs
      (list r-knitr))
@@ -19771,14 +19828,14 @@ users of rARPACK are advised to switch to the RSpectra package.")
 (define-public r-compositions
   (package
     (name "r-compositions")
-    (version "2.0-5")
+    (version "2.0-6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "compositions" version))
        (sha256
         (base32
-         "0niccv8i3jrcjnjm7dygzhz6bfah9za6lswa669pfpgsycilpf51"))))
+         "0d0wlrwfpjvz02cwrqpg5bnrf8isz359dl9qqxn9yb6czpmp9ls5"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-bayesm r-mass r-robustbase r-tensora))
@@ -21249,13 +21306,13 @@ lspec, polyclass, and polymars.")
 (define-public r-rms
   (package
     (name "r-rms")
-    (version "6.5-0")
+    (version "6.6-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rms" version))
        (sha256
-        (base32 "11dibpjgbhlqzn97254hlp6p6wfld7bnw4j5rr0dqwynj6fq2vzx"))))
+        (base32 "0p32nqb4pj8dddi4dwjbr59wp6q6vvmarq97vpdaxwrr8fwsvazk"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-cluster
@@ -21265,7 +21322,8 @@ lspec, polyclass, and polymars.")
            r-hmisc
            r-htmltable
            r-htmltools
-           r-lattice
+           r-kableextra
+           r-knitr
            r-mass
            r-multcomp
            r-nlme
@@ -23474,13 +23532,13 @@ the graph, and propagating graph labels.")
 (define-public r-scs
   (package
     (name "r-scs")
-    (version "3.0-1")
+    (version "3.2.4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "scs" version))
               (sha256
                (base32
-                "04srf33zw4dxv22b1h5qwjch5yg7hrvk4iq8yvxqnbr8qzp1x26n"))))
+                "13r944b9ip078hqwdpzn3jv21zm47d9l2b1f5y6glcj5pxs9iwy3"))))
     (properties `((upstream-name . "scs")))
     (build-system r-build-system)
     (home-page "https://github.com/FlorianSchwendinger/scs")
@@ -23878,18 +23936,18 @@ and model output.")
 (define-public r-enrichr
   (package
     (name "r-enrichr")
-    (version "3.1")
+    (version "3.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "enrichR" version))
        (sha256
         (base32
-         "0ad7jp398prvmm2fym07268qhv40mg67dx55ml4ayqkwxwffr1i9"))))
+         "1g97q6vqwvb2l02y61343sblarqi433gjl3qmlyxjxq2lnjrnak1"))))
     (properties `((upstream-name . "enrichR")))
     (build-system r-build-system)
     (propagated-inputs
-     (list r-curl r-ggplot2 r-httr r-rjson))
+     (list r-curl r-ggplot2 r-httr r-rjson r-writexls))
     (native-inputs
      (list r-knitr))
     (home-page "https://cran.r-project.org/web/packages/enrichR/")
@@ -24808,14 +24866,14 @@ emphasize hidden group structures in networks or focus on specific nodes.")
 (define-public r-terra
   (package
     (name "r-terra")
-    (version "1.7-18")
+    (version "1.7-23")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "terra" version))
        (sha256
         (base32
-         "0ipavj170yzp88dvbka6a0y683qn78dj7chr1ym1ghncrqkmk0fn"))))
+         "1xri4cxvkpdyxvm1cv6dypyv0ww9al99vmrhzhscvwj7xycckabg"))))
     (properties `((upstream-name . "terra")))
     (build-system r-build-system)
     (inputs
@@ -27789,13 +27847,13 @@ Visualizations are also available for most of these settings.")
 (define-public r-torch
   (package
     (name "r-torch")
-    (version "0.9.1")
+    (version "0.10.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "torch" version))
        (sha256
-        (base32 "03qbdws6j5v2vmdgdnwfd0248s2qirnxpm9v4302vqlq3c0i83c2"))))
+        (base32 "1ydazl7v10vm69573y871rq1dvbgdvlvhcs6di7xw7i4z4kg2gxm"))))
     (properties `((upstream-name . "torch")))
     (build-system r-build-system)
     (arguments
@@ -27826,6 +27884,7 @@ Visualizations are also available for most of these settings.")
            r-callr
            r-cli
            r-coro
+           r-desc
            r-ellipsis
            r-glue
            r-magrittr
@@ -28220,13 +28279,13 @@ finding peaks in spectra, converting humidity measures.")
 (define-public r-qqconf
   (package
     (name "r-qqconf")
-    (version "1.3.1")
+    (version "1.3.2")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "qqconf" version))
               (sha256
                (base32
-                "1vvw79l8nqpqvmfpff5khgdjbs1s2q5ylg72lvkihd2qfk0d8cf5"))))
+                "18wfvljd6gbf9am3hh14fgp06gpa04vw9nhl7q07li7rmlkxc1cl"))))
     (properties `((upstream-name . "qqconf")))
     (build-system r-build-system)
     (inputs (list fftw))
@@ -28980,18 +29039,19 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.")
 (define-public r-quanteda
   (package
     (name "r-quanteda")
-    (version "3.2.4")
+    (version "3.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "quanteda" version))
        (sha256
         (base32
-         "1yg3lgckh6fncmw037p4gaa2bab59yh6izqix1cgyysjg4jpcw62"))))
+         "19b36r1fd493mfcjp58fd986kgyhd2q396il8gb1cpa5cfpny983"))))
     (properties `((upstream-name . "quanteda")))
     (build-system r-build-system)
     (propagated-inputs
      (list r-fastmatch
+           r-jsonlite
            r-magrittr
            r-matrix
            r-rcpp
@@ -30097,14 +30157,14 @@ need to derive the partial derivatives.")
 (define-public r-rstanarm
   (package
     (name "r-rstanarm")
-    (version "2.21.3")
+    (version "2.21.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rstanarm" version))
        (sha256
         (base32
-         "19rj396q84maxnd9d2xcd5rblg3310xn7sqbd6k18kwf3dvd7wp9"))))
+         "11diz486ak31zx5402kra3s6nd76cvnla8frfn0kc7dzwhiwcspc"))))
     (properties `((upstream-name . "rstanarm")))
     (build-system r-build-system)
     (inputs
@@ -32062,14 +32122,14 @@ user-level code from spatstat, except for the code for linear networks.")
 (define-public r-spatstat-linnet
   (package
     (name "r-spatstat-linnet")
-    (version "3.0-6")
+    (version "3.1-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat.linnet" version))
        (sha256
         (base32
-         "0sk0zg4fhy3pryi06i0lvhkrgh47r3h4jxw231i8n5mzng1x828n"))))
+         "037hggsd9wmiwlxc8wjabzsiqlk5gf6mflm87pps370nmxkavc5r"))))
     (properties
      `((upstream-name . "spatstat.linnet")))
     (build-system r-build-system)
@@ -32872,13 +32932,13 @@ value.")
 (define-public r-confintr
   (package
     (name "r-confintr")
-    (version "0.2.0")
+    (version "1.0.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "confintr" version))
               (sha256
                (base32
-                "1zpprv5ysmnqn83xdsixsm6jhsi1gck32z6x60gp0y8xs25mwcbg"))))
+                "15vsdbqj5w4qbk7kwp1jqyc3phmmy8s981xjj0n0yy48xhy37f8g"))))
     (properties `((upstream-name . "confintr")))
     (build-system r-build-system)
     (propagated-inputs (list r-boot))
@@ -32978,21 +33038,21 @@ model.")
 (define-public r-igraph
   (package
     (name "r-igraph")
-    (version "1.4.1")
+    (version "1.4.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "igraph" version))
        (sha256
         (base32
-         "1waxa15ng4lqr07s68br81ihdnxy5dnx8iygyzkwnyz8dbs5i8h8"))))
+         "1raaih254dcd19d4sqmb8w8ih5plbvik11nsr9q68nm2n6nh0lvx"))))
     (build-system r-build-system)
     (native-inputs
      (list gfortran r-knitr))
     (inputs
      (list gmp glpk libxml2 zlib))
     (propagated-inputs
-     (list r-magrittr r-matrix r-pkgconfig r-rlang))
+     (list r-cpp11 r-magrittr r-matrix r-pkgconfig r-rlang))
     (home-page "https://igraph.org")
     (synopsis "Network analysis and visualization")
     (description
@@ -33318,14 +33378,14 @@ for creating, simulating, or validating values for such parameters.")
 (define-public r-tune
   (package
     (name "r-tune")
-    (version "1.1.0")
+    (version "1.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tune" version))
        (sha256
         (base32
-         "1pp3pgxwpqihxfjwf9mb5rc0yv60q47n7z399z21zp4jbwryxymh"))))
+         "0kl8bpd1i5ir6lrx055rilvb7kg0iws5f4618956h3g8sif1lvmg"))))
     (properties `((upstream-name . "tune")))
     (build-system r-build-system)
     (propagated-inputs
@@ -33363,14 +33423,14 @@ methods, and post-processing steps.")
 (define-public r-workflowsets
   (package
     (name "r-workflowsets")
-    (version "1.0.0")
+    (version "1.0.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "workflowsets" version))
        (sha256
         (base32
-         "12wj0m6kqnjh8k5k14kqh40wf14gzyg5l3shhbpr2lvk87l9ssqq"))))
+         "1rv82lx1vmhjqlim7y5vpfsa7mb6msvkhiz17hxr5k9244ykmbhi"))))
     (properties `((upstream-name . "workflowsets")))
     (build-system r-build-system)
     (propagated-inputs
@@ -33642,14 +33702,14 @@ analysis using @code{dplyr}, @code{ggplot2}, and other Tidy tools.")
 (define-public r-parsnip
   (package
     (name "r-parsnip")
-    (version "1.0.4")
+    (version "1.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "parsnip" version))
        (sha256
         (base32
-         "1305z2pamxxaqy0qylb8vq6ixs934kfc9h2si2fdy7q5wjpdjnjh"))))
+         "13bp44i8i99yiahdjikf0xidfgxd251nhbxsnsw0ax1lv24fpggc"))))
     (properties `((upstream-name . "parsnip")))
     (build-system r-build-system)
     (propagated-inputs
@@ -34036,14 +34096,14 @@ designs.  Broman et al. (2018) <doi:10.1534/genetics.118.301595>.")
 (define-public r-seqminer
   (package
     (name "r-seqminer")
-    (version "8.6")
+    (version "8.9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "seqminer" version))
        (sha256
         (base32
-         "1fm76mam5hp5v0hj27ywna7vafrw7mnwph30fqdb17163rrhr1ca"))))
+         "1cnsy1cjz4rcm32hzcvr1d43y4m7sdkzim1mwsn3490mf3xmi3i1"))))
     (build-system r-build-system)
     (inputs
      (list zlib))
@@ -35842,14 +35902,14 @@ light-weight geometry library used by @url{http://postgis.net/,PostGIS}.")
 (define-public r-stars
   (package
     (name "r-stars")
-    (version "0.6-0")
+    (version "0.6-1")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "stars" version))
         (sha256
           (base32
-            "0zwbsqp8bihcq5sjdw05pvbh4l9s68p0qw3ffkk0jphsipvy9za9"))))
+            "19q44bs2w12lyim8gzfpgxfkp2cdf29cav4cv74vzsxrv8xdny0z"))))
     (properties `((upstream-name . "stars")))
     (build-system r-build-system)
     (propagated-inputs
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 6264d4deea..c1748e7f36 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -124,6 +124,7 @@
 ;;; Copyright © 2023 Ivan Vilata-i-Balaguer <ivan@selidor.net>
 ;;; Copyright © 2022 Demis Balbach <db@minikn.xyz>
 ;;; Copyright © 2020, 2021, 2022, 2023 Andrew Tropin <andrew@trop.in>
+;;; Copyright © 2023 Dominik Delgado Steuter <d@delgado.nrw>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -421,7 +422,7 @@ e.g. emacs-geiser-guile for Guile.")
 (define-public emacs-gptel
   (package
     (name "emacs-gptel")
-    (version "0.3.2")
+    (version "0.3.5")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -430,7 +431,7 @@ e.g. emacs-geiser-guile for Guile.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0g4p0y7bk14ixiz841am2v36fdbwigz77q4zz745m4hviaq3s30y"))))
+                "1ymqx9m6ypxdqcc9y3d90ibs3d2n6lb9dg7fn7q30lz6qa5nsc94"))))
     (build-system emacs-build-system)
     (arguments
      (list
@@ -3101,6 +3102,30 @@ Selectrum.")
 playback status, artist name and title for Emprise using Marginalia.")
     (license license:gpl3+)))
 
+(define-public emacs-eradio
+  (let ((commit "47769986c79def84307921f0277e9bb2714756c2")
+        (revision "0"))
+    (package
+      (name "emacs-eradio")
+      (version (git-version "0.1" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/olavfosse/eradio")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0lks2pph44qxc9l34nr55ha667974r8ckxdwmvcp6v9mnm05317s"))))
+      (build-system emacs-build-system)
+      (home-page "https://github.com/olavfosse/eradio")
+      (synopsis "Simple radio player for GNU Emacs")
+      (description
+       "Eradio is a simple internet radio player for Emacs.  Start, stop or
+toggle custom-defined channels.  An external media player like mpv or VLC is
+required.")
+      (license license:gpl3+))))
+
 
 ;;;
 ;;; Miscellaneous.
@@ -4026,7 +4051,7 @@ be regarded as @code{emacs-company-quickhelp} for @code{emacs-corfu}.")
 (define-public emacs-cape
   (package
     (name "emacs-cape")
-    (version "0.13")
+    (version "0.14")
     (source
      (origin
        (method git-fetch)
@@ -4035,7 +4060,7 @@ be regarded as @code{emacs-company-quickhelp} for @code{emacs-corfu}.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0nvmqfp9rv2mrisyvwfr285yww22c6wb5by3s25c83ay2ivpi8ya"))))
+        (base32 "0xicfjf49fz8kbh7wqpj9fwhm5f6s6fcb3919icggjsf2465yqls"))))
     (build-system emacs-build-system)
     (arguments
      (list
@@ -7926,14 +7951,14 @@ user.")
 (define-public emacs-subed
   (package
     (name "emacs-subed")
-    (version "1.2.1")
+    (version "1.2.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://elpa.nongnu.org/nongnu/subed-"
                                   version ".tar"))
               (sha256
                (base32
-                "09a3ggnqsm4lxqhj0z9z3df6qzibvv9lpwqij2gpiifbb4lkvj4b"))))
+                "1xlh4kqa8516rvmzy67pzs0ghk9rc919nq5b2sywd5mvzi5spxnh"))))
     (arguments
      (list
       #:tests? #t
@@ -11643,13 +11668,13 @@ hydras with one column per group of heads.")))
 (define-public emacs-ivy
   (package
     (name "emacs-ivy")
-    (version "0.13.4")
+    (version "0.14.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://elpa.gnu.org/packages/ivy-" version ".tar"))
        (sha256
-        (base32 "0qpza1c45mr8fcpnm32cck4v22fnzz1yb7kww05rzgq1k9iivx5v"))))
+        (base32 "1fzl7xcmxjg005g4676ac3jcshgmcmdr81ywmxvjcs8wj71v56jv"))))
     (build-system emacs-build-system)
     (propagated-inputs
      (list emacs-hydra))
@@ -11667,14 +11692,14 @@ expression.")
 (define-public emacs-counsel
   (package
     (name "emacs-counsel")
-    (version "0.13.4")
+    (version "0.14.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://elpa.gnu.org/packages/"
                            "counsel-" version ".tar"))
        (sha256
-        (base32 "094zfapfn1l8wjf3djkipk0d9nks0g77sbk107pfsbr3skkzh031"))))
+        (base32 "03n1qk66dcbh9xlnlzpwkb441c2xdpfc7bzx4i2szw0xh4a6g5sj"))))
     (build-system emacs-build-system)
     (propagated-inputs
      (list emacs-swiper))
@@ -11700,13 +11725,13 @@ The following completions are currently available:
 (define-public emacs-swiper
   (package
     (name "emacs-swiper")
-    (version "0.13.4")
+    (version "0.14.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://elpa.gnu.org/packages/swiper-" version ".tar"))
        (sha256
-        (base32 "197pq2cvvskib87aky907wv2am55vilr7y5dabmmm07a8vr9py0v"))))
+        (base32 "1p2qil6gj4y8y3ydqs8pbxn8j16q9r42nnc2f61c30hws504pkms"))))
     (build-system emacs-build-system)
     (propagated-inputs
      (list emacs-ivy))
@@ -15288,7 +15313,7 @@ passive voice.")
 (define-public emacs-org
   (package
     (name "emacs-org")
-    (version "9.6.3")
+    (version "9.6.4")
     (source
      (origin
        (method git-fetch)
@@ -15297,7 +15322,7 @@ passive voice.")
              (commit (string-append "release_" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0gsvhqn93mlgzhwhy5ynb03fbvl55zdfbbdgzh0y42ffyc643v8p"))))
+        (base32 "0n285p8az9386jdfixv8bzkjx5agdfyfg9a122nnk1km15j53xdj"))))
     (build-system emacs-build-system)
     (arguments
      (list
@@ -17205,7 +17230,7 @@ constructs.")
 (define-public emacs-cnfonts
   (package
     (name "emacs-cnfonts")
-    (version "1.1.0")
+    (version "1.1.1")
     (source
      (origin
        (method git-fetch)
@@ -17214,7 +17239,7 @@ constructs.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "156qj5dkipa5a3f3scldf1mcfvmp1g199ds2wyi6jk5gqfv73zsd"))))
+        (base32 "0k0mh653sjwhli6hxdyzvcqdmpxdsx1s0fwzsw69dfr6nxr7f1dv"))))
     (build-system emacs-build-system)
     (home-page "https://github.com/tumashu/cnfonts")
     (synopsis "Emacs Chinese fonts setup tool")
@@ -17522,13 +17547,13 @@ containing words from the Rime project.")
 (define-public emacs-pyim
   (package
     (name "emacs-pyim")
-    (version "5.3.1")
+    (version "5.3.2")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://elpa.gnu.org/packages/pyim-" version ".tar"))
        (sha256
-        (base32 "0lkshw52xdrcbdrgmjb665bpyga61qlk29rrzrrj7s82n09bq9kv"))))
+        (base32 "13irkmhlfq99glyy0vhj559si5672cqcysjxlxn7lvckxr298vzc"))))
     (build-system emacs-build-system)
     (propagated-inputs
      (list emacs-async emacs-popup emacs-posframe emacs-xr))
@@ -19030,16 +19055,16 @@ multiplexer.")
 (define-public emacs-plz
   (package
     (name "emacs-plz")
-    (version "0.4")
+    (version "0.5.4")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/alphapapa/plz.el")
-             (commit version)))
+             (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0sfgbq6nn9prxqg5qs576rlpszbhp70yj3d8r7hqckrd5s0sbk13"))))
+        (base32 "1ccddvbhb3n02s2krgyqapll7kbzxjhldzn8g8gmnqfsmwpg9d2r"))))
     (build-system emacs-build-system)
     (inputs (list curl))
     (arguments
@@ -19061,7 +19086,7 @@ which avoids some of the issues with using Emacs’s built-in Url library.")
 (define-public emacs-ement
   (package
     (name "emacs-ement")
-    (version "0.8.2")
+    (version "0.8.3")
     (source
      (origin
        (method git-fetch)
@@ -19070,7 +19095,7 @@ which avoids some of the issues with using Emacs’s built-in Url library.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0qzml4hrylvsd25vyyj1pf77kvv8kzjyzap00d4s182gvva4lvks"))))
+        (base32 "17s3sl0dijgmhnaryw08g6vn6za46xz6a709rsfrdis8v1knqd7z"))))
     (build-system emacs-build-system)
     (arguments
      (list #:emacs emacs))              ;need libxml support
@@ -24386,6 +24411,12 @@ It replaces the standard completions buffer with Ido prompt.")
        (sha256
         (base32 "06vbc9ycz1nbjwjkg99y3lj6jwb6lnwnmkqf09yr00jjrrfhfash"))))
     (build-system emacs-build-system)
+    (arguments
+     (list
+      #:emacs (if (target-64bit?)
+                  emacs-minimal
+                  ;; Require wide-int support for 32-bit platform.
+                  emacs-wide-int)))
     (home-page "https://github.com/Fanael/wordgen.el")
     (synopsis "Random word generator")
     (description "This package provides functions to generate random words
@@ -24522,14 +24553,14 @@ modes of SLIME.")
 (define-public emacs-sml-mode
   (package
     (name "emacs-sml-mode")
-    (version "6.11")
+    (version "6.12")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://elpa.gnu.org/packages/sml-mode-"
                            version ".tar"))
        (sha256
-        (base32 "05vga709kphbx6jacqh57cq5gyicwrxxf81gask5lbq7vzfzlbfc"))))
+        (base32 "19wyxsnw60lmjbb7ijislpv9vzk9996rh1b0iw7wyrqszfxy2p20"))))
     (build-system emacs-build-system)
     (home-page "https://elpa.gnu.org/packages/sml-mode.html")
     (synopsis "Major mode for editing (Standard) ML")
@@ -28031,7 +28062,7 @@ tabulated-lists).")
 (define-public emacs-eat
   (package
     (name "emacs-eat")
-    (version "0.7")
+    (version "0.8")
     (source
      (origin
        (method git-fetch)
@@ -28041,7 +28072,7 @@ tabulated-lists).")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "05wpjqbj0jv1sax788rdj0myfi596rimvfwh4mg0w6kcza291xiq"))
+         "1fb66g7jjc7dhw61323d94mx7gqfp6ylf9a7v5qym1n92mv48bdr"))
        (modules '((guix build utils)))
        (snippet
         #~(begin
@@ -35305,7 +35336,7 @@ and preferred services can easily be configured.")
 (define-public emacs-ivy-avy
   (package
     (name "emacs-ivy-avy")
-    (version "0.13.4")
+    (version "0.14.0")
     (source
      (origin
        (method url-fetch)
@@ -35313,7 +35344,7 @@ and preferred services can easily be configured.")
              "https://elpa.gnu.org/packages/"
              "ivy-avy-" version ".tar"))
        (sha256
-        (base32 "1q5caxm4rnh4jy5n88dhkdbx1afsshmfki5dl8xsqbdb3y0zq7yi"))))
+        (base32 "0gjpvjahhkxsakqrcni78v71fsrh3f0jrs55a4kqc5hv6qyn8hk9"))))
     (build-system emacs-build-system)
     (propagated-inputs
      (list emacs-ivy emacs-avy))
@@ -35397,7 +35428,7 @@ files, providing syntax highlighting and indentation rules.")
 (define-public emacs-ivy-hydra
   (package
     (name "emacs-ivy-hydra")
-    (version "0.13.5")
+    (version "0.14.0")
     (source
      (origin
        (method url-fetch)
@@ -35405,7 +35436,7 @@ files, providing syntax highlighting and indentation rules.")
              "https://elpa.gnu.org/packages/"
              "ivy-hydra-" version ".tar"))
        (sha256
-        (base32 "06rln9bnq5hli5rqlm47fb68b8llpqrmzwqqv4rn7mx3854i9a5x"))))
+        (base32 "1gsjr2yny9qcj56cb4xy47la11z0lszq0f2qws0yzyh02ng30k1n"))))
     (build-system emacs-build-system)
     (propagated-inputs
      (list emacs-ivy emacs-hydra))
@@ -36735,6 +36766,30 @@ categories and highlighting specific modes that many commands use to
 accomplish different tasks.")
       (license license:asl2.0))))
 
+(define-public emacs-totp
+  (let ((commit "a5e059b8475b32bc7f5ddadda248cf84449ed722") ;no releases
+        (revision "0"))
+    (package
+      (name "emacs-totp")
+      (home-page "https://github.com/juergenhoetzel/emacs-totp")
+      (version (git-version "0.1.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url home-page)
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0b76fxk9r3n9zii75q1957ivb6ap5px5h87kagxz083nl77jky7a"))))
+      (build-system emacs-build-system)
+      (synopsis "Generate Time-based One-time Passwords (TOTP) in Emacs")
+      (description
+       "emacs-TOTP implements @acronym{TOTP, Time-based One-time Passwords} as
+specified in RFC 6238.  It supports reading secrets in HEX and multiple base32
+variations, including non-standard base32 encodings.")
+       (license license:gpl3+))))
+
 ;;;
 ;;; Avoid adding new packages to the end of this file. To reduce the chances
 ;;; of a merge conflict, place them above by existing packages with similar
diff --git a/gnu/packages/gstreamer.scm b/gnu/packages/gstreamer.scm
index 8971c11479..a04671beda 100644
--- a/gnu/packages/gstreamer.scm
+++ b/gnu/packages/gstreamer.scm
@@ -589,6 +589,7 @@ This package provides the core library and elements.")
            xorg-server-for-tests))
     (arguments
      (list
+      #:meson meson-0.63
       #:phases
       #~(modify-phases %standard-phases
           #$@%common-gstreamer-phases
@@ -654,6 +655,7 @@ for the GStreamer multimedia library.")
     (build-system meson-build-system)
     (arguments
      (list
+      #:meson meson-0.63
       #:glib-or-gtk? #t              ; To wrap binaries and/or compile schemas
       #:phases
       #~(modify-phases %standard-phases
@@ -776,6 +778,7 @@ model to base your own plug-in on, here it is.")
     (build-system meson-build-system)
     (arguments
      (list
+      #:meson meson-0.63
       #:configure-flags #~(list "-Dsctp-internal-usrsctp=disabled")
       #:glib-or-gtk? #t              ; To wrap binaries and/or compile schemas
       #:phases
@@ -954,7 +957,8 @@ par compared to the rest.")
         (base32 "1486x08bwasq6l7kc75nph5az61siq9mbgkgpw4kf1mxn16z8c4g"))))
     (build-system meson-build-system)
     (arguments
-     (list #:glib-or-gtk? #t         ; To wrap binaries and/or compile schemas
+     (list #:meson meson-0.63
+           #:glib-or-gtk? #t         ; To wrap binaries and/or compile schemas
            #:phases
            #~(modify-phases %standard-phases
                #$@%common-gstreamer-phases
@@ -1035,6 +1039,7 @@ decoders, muxers, and demuxers provided by FFmpeg.")
     (build-system meson-build-system)
     (arguments
      (list
+      #:meson meson-0.63
       #:tests? #f                    ; FIXME: 16/23 failing tests.
       #:glib-or-gtk? #t              ; To wrap binaries and/or compile schemas
       #:phases #~(modify-phases %standard-phases
@@ -1103,6 +1108,7 @@ binary, but none of the actual plugins.")))
     (build-system meson-build-system)
     (arguments
      (list
+      #:meson meson-0.63
       #:modules `((guix build meson-build-system)
                   (guix build utils)
                   ((guix build python-build-system) #:prefix python:))
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index ae667acdee..dc0b6b485c 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -484,7 +484,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
 ;; The current "stable" kernels. That is, the most recently released major
 ;; versions that are still supported upstream.
 
-(define-public linux-libre-6.2-version "6.2.10")
+(define-public linux-libre-6.2-version "6.2.11")
 (define-public linux-libre-6.2-gnu-revision "gnu")
 (define deblob-scripts-6.2
   (linux-libre-deblob-scripts
@@ -494,12 +494,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
    (base32 "0ir5vvbdh6dly5ld8mfp7285g8k88w5bb32hj4wmgyqsbfqc6rf2")))
 (define-public linux-libre-6.2-pristine-source
   (let ((version linux-libre-6.2-version)
-        (hash (base32 "1zm4xvxdy6sqqwcich46mr4dh3kpmp40bawwahrg4lr7rp1n5iap")))
+        (hash (base32 "0iyx03z58pv1d5nrryjx94k3nxwyvm4b3bim6nawg1qbws26f8qd")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-6.2)))
 
-(define-public linux-libre-6.1-version "6.1.23")
+(define-public linux-libre-6.1-version "6.1.24")
 (define-public linux-libre-6.1-gnu-revision "gnu")
 (define deblob-scripts-6.1
   (linux-libre-deblob-scripts
@@ -509,7 +509,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
    (base32 "0cchdhjra74zanyk14brv2l2dvxpg8dn58rn477lgfb44mcnhq33")))
 (define-public linux-libre-6.1-pristine-source
   (let ((version linux-libre-6.1-version)
-        (hash (base32 "1szblfmm8gx0am017y30ywc60b1gqarplgmcs5zy7bshhwp3fn3l")))
+        (hash (base32 "0135aj8asplpxqr48hwdmwynx8n8hzhdgh55yl8r0n1kivisgrma")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-6.1)))
@@ -517,7 +517,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
 ;; The "longterm" kernels — the older releases with long-term upstream support.
 ;; Here are the support timelines:
 ;; <https://www.kernel.org/category/releases.html>
-(define-public linux-libre-5.15-version "5.15.106")
+(define-public linux-libre-5.15-version "5.15.107")
 (define-public linux-libre-5.15-gnu-revision "gnu")
 (define deblob-scripts-5.15
   (linux-libre-deblob-scripts
@@ -527,7 +527,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
    (base32 "03hwhwbcicwyx5i30d6m715kwgrxz4h21xhk55wnawlk8zhx3r35")))
 (define-public linux-libre-5.15-pristine-source
   (let ((version linux-libre-5.15-version)
-        (hash (base32 "1r4g7ipcmj7k9dpwd5p2kd0f3iidnzl6z9g2cq4mfcw0h97r7rl4")))
+        (hash (base32 "1a5gqpxmzls5mp4a0cw10ldrps4pvbn19nzfri91ys25j1v0wdqr")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.15)))
diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index b2e6a3862f..2a07a1b92f 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -11717,11 +11717,11 @@ be used with @code{cl-yacc}.")
   (sbcl-package->ecl-package sbcl-cl-lex))
 
 (define-public sbcl-cl-colors2
-  (let ((commit "795aedee593b095fecde574bd999b520dd03ed24")
-        (revision "1"))
+  (let ((commit "d620e7fb504bbec3ed48cc7cd03f60ce2bb3735d")
+        (revision "2"))
     (package
       (name "sbcl-cl-colors2")
-      (version (git-version "0.2.1" revision commit))
+      (version (git-version "0.5.0" revision commit))
       (source
        (origin
          (method git-fetch)
@@ -11730,7 +11730,7 @@ be used with @code{cl-yacc}.")
                (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "0hlyf4h5chkjdp9armla5w4kw5acikk159sym7y8c4jbjp9x47ih"))))
+          (base32 "14wx006lv4bhf86z68484kphm5jsh86ns60pb4i1bi8kl8lp03r0"))))
       (build-system asdf-build-system/sbcl)
       (native-inputs
        (list sbcl-clunit2))
diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 4af6626024..4f1243e8c0 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -435,7 +435,13 @@ an interpreter, a compiler, a debugger, and much more.")
        (uri (string-append "mirror://sourceforge/sbcl/sbcl/" version "/sbcl-"
                            version "-source.tar.bz2"))
        (sha256
-        (base32 "1ahyrc3p9cf7y5zbgzvb9yxa8a480ccis4ksijlajck3z8n1dk24"))))
+        (base32 "1ahyrc3p9cf7y5zbgzvb9yxa8a480ccis4ksijlajck3z8n1dk24"))
+       (modules '((guix build utils)))
+       (snippet
+        '(begin
+           ;; Don't force ARMv5.
+           (substitute* "src/runtime/Config.arm-linux"
+             (("-march=armv5") ""))))))
     (build-system gnu-build-system)
     (outputs '("out" "doc"))
     (native-inputs
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 70319238d9..90a3e153ce 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -3364,7 +3364,7 @@ Note: currently this package does not provide GPU support.")
   (package
     (inherit python-pytorch)
     (name "python-pytorch")
-    (version "1.12.1")
+    (version "1.13.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -3374,7 +3374,7 @@ Note: currently this package does not provide GPU support.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1wimgnmn8kfazc8vhf65b9psdwj80n3chzkd8ic28541ac2zqzpk"))
+                "17yxjzwp4zp75fz7czgz9acijzw7dpyqcza50v8y1x7hfg2gw369"))
               (patches (search-patches "python-pytorch-system-libraries.patch"
                                        "python-pytorch-runpath.patch"))
               (modules '((guix build utils)))
@@ -3394,7 +3394,10 @@ Note: currently this package does not provide GPU support.")
                               "gloo" "googletest" "ios-cmake" "NNPACK"
                               "onnx" "protobuf" "pthreadpool"
                               "pybind11" "python-enum" "python-peachpy"
-                              "python-six" "tbb" "XNNPACK" "zstd"))))))))
+                              "python-six" "tbb" "XNNPACK" "zstd"))
+                  (substitute* "functorch/CMakeLists.txt"
+                    (("\\$\\{_rpath_portable_origin\\}/../torch/lib")
+                     "$ORIGIN/../torch/lib"))))))))
 
 ;; Keep this in sync with python-pytorch
 (define-public python-torchvision
@@ -3500,7 +3503,7 @@ of Hidden Markov Models.")
 (define-public liblantern
   (package
     (name "liblantern")
-    (version "0.9.1")
+    (version "0.10.0")
     (source
      (origin
        (method git-fetch)
@@ -3509,7 +3512,7 @@ of Hidden Markov Models.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1rycs7fgm03fxp8lxj8ljrdwy5whxd4554xzklbcmn4mcwbxgg57"))))
+        (base32 "12480fac9xq7rgw0q5f2cnvmakhakjsnq1gvh2ncjfwxz34n8fl7"))))
     (build-system cmake-build-system)
     (arguments
      (list
@@ -3518,7 +3521,7 @@ of Hidden Markov Models.")
       (let ((python-version (version-major+minor (package-version python))))
         #~(modify-phases %standard-phases
             (add-after 'unpack 'chdir
-              (lambda _ (chdir "lantern")))
+              (lambda _ (chdir "src/lantern")))
             (add-after 'chdir 'do-not-download-binaries
               (lambda* (#:key inputs #:allow-other-keys)
                 (substitute* "CMakeLists.txt"
@@ -3844,8 +3847,8 @@ simple speech recognition.")
                  "lib.")))))))))
 
 (define-public nerd-dictation
-  (let* ((commit "53ab129a5ee0f8b5df284e8cf2229219b732c59e")
-         (revision "0"))
+  (let* ((commit "0eb44b7fd0927d69c92de5566e5807ed2c2e20b7")
+         (revision "1"))
     (package
       (name "nerd-dictation")
       (version (git-version "0" revision commit))
@@ -3857,7 +3860,7 @@ simple speech recognition.")
                (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "184qijiva1h1x00dzicik0yzgh78pq2lqr5fkgicgp26mkarlyhc"))))
+          (base32 "0frdpswv6w3cwj3c7wd5w8gj3s1hvpdwd48qhfhfxf7imahz9bqf"))))
       (build-system python-build-system)
       (arguments
        '(#:phases
@@ -3875,7 +3878,7 @@ The user configuration lets you manipulate text using Python string
 operations.  It has zero overhead, as this relies on manual activation and
 there are no background processes.  Dictation is accessed manually with
 @code{nerd-dictation begin} and @code{nerd-dictation end} commands.")
-      (license license:gpl3+))))
+      (license license:gpl2+))))
 
 (define-public nerd-dictation/wayland
   (package
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 23bd358240..5f9e2d9884 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -52,6 +52,7 @@
 ;;; Copyright © 2022 jgart <jgart@dismail.de>
 ;;; Copyright © 2023 Jonathan Brielmaier <jonathan.brielmaier@web.de>
 ;;; Copyright © 2023 Antero Mejr <antero@mailbox.org>
+;;; Copyright © 2023 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -69,33 +70,32 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages music)
-  #:use-module (guix gexp)
-  #:use-module (guix utils)
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix git-download)
   #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix build-system gnu)
   #:use-module (guix build-system ant)
   #:use-module (guix build-system cmake)
+  #:use-module (guix build-system glib-or-gtk)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
+  #:use-module (guix build-system pyproject)
   #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system scons)
-  #:use-module (guix build-system glib-or-gtk)
-  #:use-module (guix build-system qt)
-  #:use-module (guix build-system waf)
   #:use-module (guix build-system trivial)
-  #:use-module (guix build-system go)
-  #:use-module (guix build-system qt)
+  #:use-module (guix build-system waf)
+  #:use-module (guix download)
+  #:use-module (guix gexp)
+  #:use-module (guix git-download)
+  #:use-module (guix packages)
+  #:use-module (guix utils)
   #:use-module (gnu packages)
   #:use-module (gnu packages admin)
   #:use-module (gnu packages algebra)
   #:use-module (gnu packages apr)
+  #:use-module (gnu packages assembly)
   #:use-module (gnu packages audio)
   #:use-module (gnu packages autotools)
-  #:use-module (gnu packages assembly)
   #:use-module (gnu packages backup)
   #:use-module (gnu packages base) ;libbdf
   #:use-module (gnu packages bash)
@@ -104,9 +104,9 @@
   #:use-module (gnu packages boost)
   #:use-module (gnu packages build-tools)
   #:use-module (gnu packages cdrom)
-  #:use-module (gnu packages code)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cmake)
+  #:use-module (gnu packages code)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages cpp)
   #:use-module (gnu packages crypto)
@@ -125,13 +125,14 @@
   #:use-module (gnu packages freedesktop)
   #:use-module (gnu packages game-development)
   #:use-module (gnu packages gcc)
-  #:use-module (gnu packages gnupg)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages ghostscript)
   #:use-module (gnu packages gl)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages gnunet)
+  #:use-module (gnu packages gnupg)
+  #:use-module (gnu packages golang)
   #:use-module (gnu packages gpodder)
   #:use-module (gnu packages graphics)
   #:use-module (gnu packages graphviz)
@@ -144,12 +145,13 @@
   #:use-module (gnu packages imagemagick)
   #:use-module (gnu packages java)
   #:use-module (gnu packages kde-frameworks)
-  #:use-module (gnu packages libffi)
   #:use-module (gnu packages libevent)
+  #:use-module (gnu packages libffi)
   #:use-module (gnu packages libusb)
   #:use-module (gnu packages linux) ; for alsa-utils
   #:use-module (gnu packages lirc)
   #:use-module (gnu packages llvm)
+  #:use-module (gnu packages lua)
   #:use-module (gnu packages man)
   #:use-module (gnu packages mp3)
   #:use-module (gnu packages mpd)
@@ -182,8 +184,8 @@
   #:use-module (gnu packages stb)
   #:use-module (gnu packages tcl)
   #:use-module (gnu packages terminals)
-  #:use-module (gnu packages texinfo)
   #:use-module (gnu packages tex)
+  #:use-module (gnu packages texinfo)
   #:use-module (gnu packages time)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages version-control)
@@ -194,11 +196,9 @@
   #:use-module (gnu packages wm)
   #:use-module (gnu packages wxwidgets)
   #:use-module (gnu packages xdisorg)
+  #:use-module (gnu packages xiph)
   #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg)
-  #:use-module (gnu packages xiph)
-  #:use-module (gnu packages golang)
-  #:use-module (gnu packages lua)
   #:use-module ((srfi srfi-1) #:select (last)))
 
 (define-public audacious
@@ -1556,50 +1556,51 @@ listeners answer questions about music quickly and simply.")
 (define-public abjad
   (package
     (name "abjad")
+    ;; XXX: The latest version which supports current Guix's Python 3.9.9.
     (version "3.4")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
-         (url "https://github.com/Abjad/abjad")
-         (commit (string-append "v" version))))
+             (url "https://github.com/Abjad/abjad")
+             (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32
-         "0s63vk9fifp0im9c31kb9ck39mbaxhrls993d8fvg0nkg41z1jnz"))))
-    (build-system python-build-system)
+        (base32 "0s63vk9fifp0im9c31kb9ck39mbaxhrls993d8fvg0nkg41z1jnz"))))
+    (build-system pyproject-build-system)
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'loosen-requirements
-           (lambda _
-             (substitute* "setup.py"
-               ;; Permit newer versions of uqbar.  Remove for >3.4.
-               ((", <0\\.5\\.0")
-                ""))))
-         (replace 'check
-           (lambda* (#:key tests? #:allow-other-keys)
-             (when tests?
-               ;; See: https://stackoverflow.com/a/34140498
-               (invoke "python" "-m" "pytest" "tests")))))))
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; XXX. Permit newer version of uqbar, remove for >3.4. Remove in
+          ;; the next update.
+          (add-after 'unpack 'loosen-requirements
+            (lambda _
+              (substitute* "setup.py"
+                ((", <0\\.5\\.0") ""))))
+          ;; FIXME: Check why it's failing with this: Note: compilation failed
+          ;; and \version outdated, did you update input syntax with
+          ;; convert-ly?
+          (add-before 'check 'disable-failing-tests
+            (lambda _
+              (substitute* "tests/test_ext_sphinx.py"
+                (("def test_ext_sphinx_01") "def __off_test_ext_sphinx_01")))))))
     (inputs
      (list lilypond))
-    (propagated-inputs
-     (list python-ply
-           python-quicktions
-           python-roman
-           python-six
-           python-uqbar
-           ;; XXX: These test dependencies(?) are listed as install_requires
-           ;; in setup.py.  Propagate accordingly.
-           python-black
-           python-flake8
+    (native-inputs
+     (list python-flake8
            python-isort
            python-mypy
            python-pytest
            python-pytest-cov
            python-pytest-helpers-namespace
+           python-six
            python-sphinx-autodoc-typehints))
+    (propagated-inputs
+     (list python-quicktions
+           python-ply
+           python-roman
+           python-uqbar))
     (home-page "https://abjad.github.io")
     (synopsis "Python API for building LilyPond files")
     (description
@@ -1609,7 +1610,7 @@ rests, chords, tuplets, beams and slurs in any score.  Because Abjad extends the
 programming language, you can use Abjad to make systematic changes to music as you work.
 Because Abjad wraps the LilyPond music notation package, you can use Abjad to control the
 typographic detail of symbols on the page.")
-     (license license:expat)))
+    (license license:expat)))
 
 (define-public abjad-ext-rmakers
   (package
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 612208f266..aa892a72d6 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1377,8 +1377,8 @@ environments.")
                   "0k9zkdyyzir3fvlbcfcqy17k28b51i20rpbjwlx2i1mwd2pw9cxc")))))))
 
 (define-public guix-build-coordinator
-  (let ((commit "7f6db4b55411f79ab5f2639318dc5871c1452f00")
-        (revision "77"))
+  (let ((commit "2efcd8b11954708f0b2f26ce6eb9d785e2f6aae4")
+        (revision "78"))
     (package
       (name "guix-build-coordinator")
       (version (git-version "0" revision commit))
@@ -1389,7 +1389,7 @@ environments.")
                       (commit commit)))
                 (sha256
                  (base32
-                  "07pi5yjgagv0xyz9f5cnfz1c06gzx1mpi17h3a1w5h6lp3kwqrv9"))
+                  "1s7q3bn1cccbafd5b4dk0xn2r5qjabl7rclbwf7hfjj7csv8ag2i"))
                 (file-name (string-append name "-" version "-checkout"))))
       (build-system gnu-build-system)
       (arguments
diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm
index 3c638e4ff9..60bf8409ee 100644
--- a/gnu/packages/parallel.scm
+++ b/gnu/packages/parallel.scm
@@ -4,7 +4,7 @@
 ;;; Copyright © 2015-2018, 2020-2023 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
 ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2016, 2020, 2021, 2022 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2016, 2020, 2021, 2022, 2023 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018–2022 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -465,8 +465,8 @@ features.")
 (define-public cpuinfo
   ;; There's currently no tag on this repo.
   (let ((version "0.0")
-        (revision "1")
-        (commit "866ae6e5ffe93a1f63be738078da94cf3005cce2"))
+        (revision "2")
+        (commit "53298db833c5c5a1598639e9b47cc1a602bbac26"))
     (package
       (name "cpuinfo")
       (version (git-version version revision commit))
@@ -477,10 +477,20 @@ features.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "1lmsf4bpkm19a31i40qwcjn46qf7prggziv4pbsi695bkx5as71p"))
+                  "01kfgxya2w32dz9bd3qm3i2d6nffw0qfyql11rxl7d3g830brj5k"))
                 (patches (search-patches "cpuinfo-system-libraries.patch"))))
       (build-system cmake-build-system)
-      (arguments '(#:configure-flags '("-DBUILD_SHARED_LIBS=ON")))
+      (arguments
+       (list
+        #:configure-flags '(list "-DBUILD_SHARED_LIBS=ON")
+        #:phases
+        '(modify-phases %standard-phases
+           (add-after 'unpack 'skip-bad-test
+             (lambda _
+               (substitute* "test/init.cc"
+                 (("TEST\\(CORE, known_uarch\\) \\{" m)
+                  (string-append m "\
+GTEST_SKIP() << \"See https://github.com/pytorch/cpuinfo/issues/132\";"))))))))
       (inputs
        (list googletest googlebenchmark))
       (synopsis "C/C++ library to obtain information about the CPU")
diff --git a/gnu/packages/patches/r-mixedpower-r2power.patch b/gnu/packages/patches/r-mixedpower-r2power.patch
deleted file mode 100644
index a3307ca7b5..0000000000
--- a/gnu/packages/patches/r-mixedpower-r2power.patch
+++ /dev/null
@@ -1,26 +0,0 @@
-From e882fda905150649aa887c72731144330ca297b5 Mon Sep 17 00:00:00 2001
-From: Lars-Dominik Braun <lars@6xq.net>
-Date: Fri, 28 Oct 2022 09:18:11 +0200
-Subject: [PATCH] Fix R2power with R>=4.2
-
-The previous commit missed this if statement.
----
- R/meta_functions.R | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/R/meta_functions.R b/R/meta_functions.R
-index a65f0c1..fb3feba 100644
---- a/R/meta_functions.R
-+++ b/R/meta_functions.R
-@@ -172,7 +172,7 @@ R2power <- function(model, data, fixed_effects, simvar,
-   } # end if databased
- 
-   # 2. SESOI
--  suppressWarnings(if (SESOI != F){ # supress warning generated by if statement if SESOI =! F
-+  suppressWarnings(if (!is.logical(SESOI)){
- 
-     # change beta coeficients to SESOI values
-     model@beta <- SESOI
--- 
-2.37.4
-
diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm
index e1609a463d..f265e7cd6e 100644
--- a/gnu/packages/python-crypto.scm
+++ b/gnu/packages/python-crypto.scm
@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
-;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015-2021, 2023 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2015, 2016, 2017, 2019 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2016, 2017, 2020, 2022 Marius Bakke <marius@gnu.org>
 ;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au>
@@ -1361,14 +1361,13 @@ and Backlog for a list of what is and is not currently supported.")
 (define-public python-secretstorage
   (package
     (name "python-secretstorage")
-    (version "3.3.1")
+    (version "3.3.3")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "SecretStorage" version))
         (sha256
-         (base32
-          "15ginv4gzxrx77n7517xnvf2jcpqc6ran12s951hc85zlr8nqrpx"))))
+         (base32 "0xxxxr77sgmjm1rqzdd1rkan9xg0qmv8awc1pb9adv39ycz560r4"))))
     (build-system python-build-system)
     (arguments
      '(#:tests? #f)) ; Tests require a running dbus service.
@@ -1443,17 +1442,23 @@ certificates, signing and building trust bundles.")
 (define-public python-jeepney
   (package
     (name "python-jeepney")
-    (version "0.6.0")
+    (version "0.8.0")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "jeepney" version))
         (sha256
-         (base32 "0mw6ch5s4czpmsiwqwhcidgk27858pl8vlvb7acrxjkm4ribcnbx"))))
-    (build-system python-build-system)
+         (base32 "01jqrk7pn94i7bpmj834pjrw7id659gfag6wpbv04fcpap94izjy"))))
+    (build-system pyproject-build-system)
     (native-inputs
-     (list python-testpath python-tornado python-trio python-pytest
-           python-pytest-trio))
+     (list python-async-timeout
+           python-testpath
+           python-trio
+           python-pytest
+           python-pytest-asyncio
+           python-pytest-trio
+           ;; For the build backend
+           python-flit-core))
     (home-page "https://gitlab.com/takluyver/jeepney")
     (synopsis "Low-level, pure Python DBus protocol wrapper")
     (description
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index e7746e1664..955c0f38c8 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -14,7 +14,7 @@
 ;;; Copyright © 2015, 2016, 2017, 2019, 2022 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2015, 2017 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2015, 2016 Erik Edrosa <erik.edrosa@gmail.com>
-;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015-2023 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2015, 2017, 2020 Kyle Meyer <kyle@kyleam.com>
 ;;; Copyright © 2015, 2016 Chris Marusich <cmmarusich@gmail.com>
 ;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org>
@@ -24740,7 +24740,7 @@ make your work easier.")
     (native-inputs
      (list python-pytest python-pytest-cov python-pytest-asyncio))
     (propagated-inputs
-     (list python-async-generator python-attrs))
+     (list python-attrs))
     (home-page "https://github.com/python-trio/outcome")
     (synopsis "Capture the outcome of Python function calls")
     (description
diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm
index a296adb599..5e479c4d52 100644
--- a/gnu/packages/qt.scm
+++ b/gnu/packages/qt.scm
@@ -1887,7 +1887,7 @@ native APIs where it makes sense.")))
               (uri (qt-urls name version))
               (sha256
                (base32
-                "0r16qxy0pfpwvna4gpz67jk3qv3qizfd659kc9iwdh8bhz7lpjrw"))))
+                "0mlhhhcxx3gpr9kh04c6fljxcj50c2j21r0wb9f7d7nk4flip7b2"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg-5)
        ((#:tests? _ #f) #f)             ; TODO: Enable the tests
@@ -2116,8 +2116,7 @@ coloring, and many more.")))
               (sha256
                (base32
                 "0vgxprgk7lak209wsg2ljzfkpwgjzscpbxmj5fyvvwm2pbnpspvk"))))
-    (native-inputs
-     (list perl pkg-config))
+    (native-inputs (list perl pkg-config))
     (inputs
      (list fontconfig
            freetype
@@ -2201,8 +2200,7 @@ information and perform area based monitoring.")
               (sha256
                (base32
                 "0bjky5ncg9yhz4a63g3jl1r5pa6i09f6g8wgzs591mhybrbmhcw8"))))
-    (inputs
-     (list qtbase-5 qtdeclarative-5))
+    (inputs (list qtbase-5 qtdeclarative-5))
     (synopsis "Qt Purchasing module")
     (description "The Qt Purchasing module provides and in-app API for
 purchasing goods and services.")))
@@ -2250,8 +2248,7 @@ selecting one of the charts themes.")
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg-5)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
-    (inputs
-     (list qtbase-5 qtdeclarative-5))
+    (inputs (list qtbase-5 qtdeclarative-5))
     (synopsis "Qt Data Visualization module")
     (description "The Qt Data Visualization module provides a way to visualize
 data in 3D as bar, scatter, and surface graphs. It is especially useful for
diff --git a/gnu/packages/radio.scm b/gnu/packages/radio.scm
index 42f5744987..f80b2751b1 100644
--- a/gnu/packages/radio.scm
+++ b/gnu/packages/radio.scm
@@ -12,6 +12,7 @@
 ;;; Copyright © 2022 Sheng Yang <styang@fastmail.com>
 ;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
 ;;; Copyright © 2022 Ryan Tolboom <ryan@using.tech>
+;;; Copyright © 2023 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -1097,7 +1098,7 @@ satellites.")
 (define-public gqrx
   (package
     (name "gqrx")
-    (version "2.15.9")
+    (version "2.15.10")
     (source
      (origin
        (method git-fetch)
@@ -1106,7 +1107,7 @@ satellites.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1a70lmcidp5ccmpvlvpfk1g7pshyp8xq2k0kgxrplf8za5hns019"))))
+        (base32 "0c1s3y7w0gcav666mnkwkb60cczab0rkwdkaqicq1768fsgyhad3"))))
     (build-system qt-build-system)
     (native-inputs
      (list pkg-config))
@@ -1591,7 +1592,6 @@ focused on DXing and being shaped by community of DXers.JTDX")
 
 (define-public js8call
   (package
-    (inherit wsjtx)
     (name "js8call")
     (version "2.2.0")
     (source
@@ -1603,49 +1603,63 @@ focused on DXing and being shaped by community of DXers.JTDX")
         (base32 "149sjwc4zg6ckgq26af93p4fxappa4k9dh7rdy67g8ajfjad4cd8"))
        (modules '((guix build utils)))
        (snippet
-        '(begin
-           ;; Delete bundled boost to use the shared one.
-           (delete-file-recursively "boost")
-           #t))))
+        #~(begin
+            ;; Delete bundled boost to use the shared one.
+            (delete-file-recursively "boost")))))
     (build-system qt-build-system)
-    (native-inputs
-     (list asciidoc gfortran pkg-config qttools-5 ruby-asciidoctor))
-    (inputs
-     `(("boost" ,boost)
-       ("fftw" ,fftw)
-       ("fftwf" ,fftwf)
-       ("hamlib" ,wsjtx-hamlib)
-       ("libusb" ,libusb)
-       ("qtbase" ,qtbase-5)
-       ("qtmultimedia-5" ,qtmultimedia-5)
-       ("qtserialport" ,qtserialport)))
     (arguments
-     `(#:tests? #f ; No test suite
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'fix-paths
-           (lambda* (#:key outputs #:allow-other-keys)
-             (substitute* "CMakeLists.txt"
-               (("DESTINATION /usr/share")
-                (string-append "DESTINATION "
-                               (assoc-ref outputs "out")
-                               "/share")))))
-         (add-after 'unpack 'fix-hamlib
-           (lambda _
-             (substitute* "CMake/Modules/Findhamlib.cmake"
-               (("set \\(ENV\\{PKG_CONFIG_PATH\\}.*\\)")
-                "set (__pc_path $ENV{PKG_CONFIG_PATH})
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-paths
+            (lambda _
+              ;; XXX: How to get the /tmp/<build-name>.drv-<num> path? Use
+              ;; output path for after install check phase instead.
+              (substitute* "media/tests/test"
+                (("~/js8call-prefix/build/js8")
+                 (string-append #$output "/bin/js8"))
+                (("/opt/js8call/bin/js8")
+                 (string-append #$output "/bin/js8")))
+              (substitute* "CMakeLists.txt"
+                (("DESTINATION /usr/share")
+                 (string-append "DESTINATION " #$output "/share")))))
+          (add-after 'unpack 'fix-hamlib
+            (lambda _
+              (substitute* "CMake/Modules/Findhamlib.cmake"
+                (("set \\(ENV\\{PKG_CONFIG_PATH\\}.*\\)")
+                 "set (__pc_path $ENV{PKG_CONFIG_PATH})
   list (APPEND __pc_path \"${__hamlib_pc_path}\")
   set (ENV{PKG_CONFIG_PATH} \"${__pc_path}\")"))
-             (substitute* "HamlibTransceiver.hpp"
-               (("#ifdef JS8_USE_LEGACY_HAMLIB")
-                "#if 1")))))))
+              (substitute* "HamlibTransceiver.hpp"
+                (("#ifdef JS8_USE_LEGACY_HAMLIB")
+                 "#if 1"))))
+          (delete 'check)
+          (add-after 'install 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                (with-directory-excursion "../js8call/media/tests"
+                  (invoke "./test"))))))))
+    (native-inputs
+     (list asciidoc
+           gfortran
+           pkg-config
+           qttools-5
+           ruby-asciidoctor))
+    (inputs
+     (list boost
+           fftw
+           fftwf
+           libusb
+           qtbase-5
+           qtmultimedia-5
+           qtserialport
+           wsjtx-hamlib))
+    (home-page "http://js8call.com/")
     (synopsis "Weak-signal ham radio communication program")
     (description
      "JS8Call is a software using the JS8 digital mode (a derivative of the FT8
 mode) providing weak signal keyboard to keyboard messaging to amateur radio
 operators.")
-    (home-page "http://js8call.com/")
     (license license:gpl3)))
 
 (define-public xnec2c
@@ -2577,7 +2591,7 @@ software-defined radio receivers.")
 (define-public wfview
   (package
     (name "wfview")
-    (version "1.50")
+    (version "1.62")
     (source
      (origin
        (method git-fetch)
@@ -2586,37 +2600,46 @@ software-defined radio receivers.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1djgn1z4hibzci53mrvskz47jfq6hk8lhhqckpa93pvsi9kadl4k"))))
+        (base32 "0rrj6h5k8plq4m6fd2yxargfhqcwkxv6bdp4rmgh6bs4prl4wvwd"))))
     (build-system qt-build-system)
+    (arguments
+     (list
+      #:tests? #f  ; No test suite.
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-paths
+            (lambda _
+              (substitute* "wfview.pro"
+                (("\\.\\./wfview/")
+                 "../"))
+              (substitute* '("wfmain.cpp")
+                (("/usr/share")
+                 (string-append #$output "/share")))))
+          (replace 'configure
+            (lambda _
+              (mkdir-p "build")
+              (chdir "build")
+              (invoke "qmake"
+                      (string-append "PREFIX=" #$output)
+                      "../wfview.pro"))))))
+    ;; XXX: During the build it complains on missing git and hostname commands
+    ;; but it successfully finishes the build.
     (inputs
      (list eigen
+           hidapi
            opus
            portaudio
            pulseaudio
            qcustomplot
+           ;; TODO: Needs to be renamed to qtgamepad-5 when version 6 is
+           ;; packed.
+           qtgamepad
            qtbase-5
            qtmultimedia-5
+           ;; TODO: Needs to be renamed to qtserialport-5. when version 6 is
+           ;; packed.
            qtserialport
            rtaudio))
-    (arguments
-     `(#:tests? #f  ; No test suite.
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'fix-paths
-           (lambda* (#:key outputs #:allow-other-keys)
-             (substitute* "wfview.pro"
-               (("\\.\\./wfview/")
-                "../"))
-             (substitute* '("wfmain.cpp")
-               (("/usr/share")
-                (string-append (assoc-ref outputs "out") "/share")))))
-         (replace 'configure
-           (lambda* (#:key outputs #:allow-other-keys)
-             (mkdir-p "build")
-             (chdir "build")
-             (invoke "qmake"
-                     (string-append "PREFIX=" (assoc-ref outputs "out"))
-                     "../wfview.pro"))))))
     (home-page "https://wfview.org/")
     (synopsis "Software to control Icom radios")
     (description
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 9acc16e359..4a31233405 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1523,13 +1523,13 @@ data derived from /etc/mime.types in UNIX-type systems.")
 (define-public r-markdown
   (package
     (name "r-markdown")
-    (version "1.5")
+    (version "1.6")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "markdown" version))
               (sha256
                (base32
-                "05lq5r698bk4qs2qklvri3rlbdss9w58n5y91yf3k6x5bzwh6580"))))
+                "1sjrynkg42g7s2czwmx4lzk92fssnd73cqj63djlpbk1h66qn8j6"))))
     (build-system r-build-system)
     ;; Skip check phase because the tests require the r-knitr package to be
     ;; installed. This prevents installation failures. Knitr normally
@@ -2546,13 +2546,13 @@ functions make it easy to control additional request components.")
 (define-public r-git2r
   (package
     (name "r-git2r")
-    (version "0.31.0")
+    (version "0.32.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "git2r" version))
               (sha256
                (base32
-                "0vfn7kkkarha63vv3k8hi9y5snfsdpwdrbmych560126z9w95nzi"))))
+                "0wa6k1g7y0sx6s7map7mn579c1h07n185m163msmcjk81i62ap8v"))))
     (build-system r-build-system)
     (inputs
      (list libgit2 zlib))
@@ -3175,14 +3175,14 @@ statements.")
 (define-public r-segmented
   (package
     (name "r-segmented")
-    (version "1.6-3")
+    (version "1.6-4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "segmented" version))
        (sha256
         (base32
-         "0x7k5ycbvnfqsygrcyaaxnl0060x6869b345xc697hhr9sfxb4ai"))))
+         "14ci6hd5xlrz22gvnvy2fzpnp50fbds3wpx4mf2fgi5i7sp0hb27"))))
     (build-system r-build-system)
     (propagated-inputs (list r-mass r-nlme))
     (home-page "https://cran.r-project.org/web/packages/segmented")
@@ -5372,14 +5372,14 @@ data for species delimitation, nearest neighbor based noise detection.")
 (define-public r-deoptimr
   (package
     (name "r-deoptimr")
-    (version "1.0-11")
+    (version "1.0-12")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "DEoptimR" version))
        (sha256
         (base32
-         "0nqn12n5qlyk2zsgh57dvizy5z71xgqrhrcqj6lbzybm9c7v6x0q"))))
+         "0y9xc6lkadk3h1j22q7vnykm1xyhlbn24lkjqn8sdsmw660gjdk1"))))
     (properties `((upstream-name . "DEoptimR")))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/DEoptimR")
@@ -5703,13 +5703,13 @@ using modular prediction and response module classes.")
 (define-public r-quantreg
   (package
     (name "r-quantreg")
-    (version "5.94")
+    (version "5.95")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "quantreg" version))
        (sha256
-        (base32 "1h8p3gzaas8gdvyh13ir8xc92hiybmizb0yhnwk7gvbjp768bmaj"))))
+        (base32 "1k4n5armw4lfyy4q8llnrpgvcw7s5n8w9zfff9rr5ggbrqgah1ab"))))
     (build-system r-build-system)
     (arguments
      `(#:phases
@@ -7244,13 +7244,13 @@ experiment via several parameterizations")
 (define-public r-simr
   (package
     (name "r-simr")
-    (version "1.0.6")
+    (version "1.0.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "simr" version))
        (sha256
-        (base32 "1q8ip54c5pc7pjf8127jpk56nr3f8rmwqdcrr84faj4lfbr27wqb"))))
+        (base32 "1rfnhyqvdazvar7r1ml71lskh1hdk3yfzv5jlcz18wzffscgkgmb"))))
     (properties `((upstream-name . "simr")))
     (build-system r-build-system)
     (propagated-inputs
@@ -7276,9 +7276,10 @@ models, using simulation.  It was designed to work with models fit using the
     (license license:gpl2+)))
 
 (define-public r-mixedpower
-  ;; This commit contains fixes for R>=4.2. A newer release does not exist.
-  (let ((commit "6520195481bca3ce01862ef80a28c53b0a35d0f5")
-        (revision "1"))
+  ;; This commit contains fixes for R>=4.2 and contains new features. A
+  ;; newer release does not exist.
+  (let ((commit "b2b87068546327d8f592d141e5482e0478c1b2ee")
+        (revision "2"))
     (package
       (name "r-mixedpower")
       (version (git-version "2.0" revision commit))
@@ -7291,9 +7292,7 @@ models, using simulation.  It was designed to work with models fit using the
                  (commit commit)))
           (file-name (git-file-name name version))
           (sha256
-            (base32 "114z9pvya2jg10y804ga41gq00r7zcw4a7c7234ybhmv3jqw78q1"))
-          (patches
-            (search-patches "r-mixedpower-r2power.patch"))))
+            (base32 "0pys66a6c1k2fp5qk9grhzg1q1d3q51rggcilmdssimkmcsm234z"))))
       (properties `((upstream-name . "mixedpower")))
       (build-system r-build-system)
       (propagated-inputs
diff --git a/guix/packages.scm b/guix/packages.scm
index 2d33212f44..bce82ab3a3 100644
--- a/guix/packages.scm
+++ b/guix/packages.scm
@@ -183,6 +183,7 @@
             package-closure
 
             default-guile
+            guile-for-grafts
             default-guile-derivation
             set-guile-for-build
             package-file
diff --git a/guix/self.scm b/guix/self.scm
index d1dcde34ac..74c953bd50 100644
--- a/guix/self.scm
+++ b/guix/self.scm
@@ -43,34 +43,42 @@
 ;;; Dependency handling.
 ;;;
 
-(define specification->package
+(define %packages
+  (let ((ref (lambda (module variable)
+               (delay
+                 (module-ref (resolve-interface
+                              `(gnu packages ,module))
+                             variable)))))
+    `(("guile"              . ,(ref 'guile 'guile-3.0-latest))
+      ("guile-avahi"        . ,(ref 'guile-xyz 'guile-avahi))
+      ("guile-json"         . ,(ref 'guile 'guile-json-4))
+      ("guile-ssh"          . ,(ref 'ssh   'guile-ssh))
+      ("guile-git"          . ,(ref 'guile 'guile-git))
+      ("guile-semver"       . ,(ref 'guile-xyz 'guile-semver))
+      ("guile-lib"          . ,(ref 'guile-xyz 'guile-lib))
+      ("guile-sqlite3"      . ,(ref 'guile 'guile-sqlite3))
+      ("guile-zlib"         . ,(ref 'guile 'guile-zlib))
+      ("guile-lzlib"        . ,(ref 'guile 'guile-lzlib))
+      ("guile-zstd"         . ,(ref 'guile 'guile-zstd))
+      ("guile-gcrypt"       . ,(ref 'gnupg 'guile-gcrypt))
+      ("guile-gnutls"       . ,(ref 'tls 'guile-gnutls))
+      ("guix-daemon"        . ,(ref 'package-management 'guix-daemon))
+      ("disarchive"         . ,(ref 'backup 'disarchive))
+      ("guile-lzma"         . ,(ref 'guile 'guile-lzma))
+      ("gzip"               . ,(ref 'compression 'gzip))
+      ("bzip2"              . ,(ref 'compression 'bzip2))
+      ("xz"                 . ,(ref 'compression 'xz))
+      ("po4a"               . ,(ref 'gettext 'po4a))
+      ("gettext-minimal"    . ,(ref 'gettext 'gettext-minimal))
+      ("gcc-toolchain"      . ,(ref 'commencement 'gcc-toolchain))
+      ("glibc-utf8-locales" . ,(ref 'base 'glibc-utf8-locales))
+      ("graphviz"           . ,(ref 'graphviz 'graphviz))
+      ("texinfo"            . ,(ref 'texinfo 'texinfo)))))
+
+(define (specification->package name)
   ;; Use our own variant of that procedure because that of (gnu packages)
   ;; would traverse all the .scm files, which is wasteful.
-  (let ((ref (lambda (module variable)
-               (module-ref (resolve-interface module) variable))))
-    (match-lambda
-      ("guile"      (ref '(gnu packages guile) 'guile-3.0-latest))
-      ("guile-avahi" (ref '(gnu packages guile-xyz) 'guile-avahi))
-      ("guile-json" (ref '(gnu packages guile) 'guile-json-4))
-      ("guile-ssh"  (ref '(gnu packages ssh)   'guile-ssh))
-      ("guile-git"  (ref '(gnu packages guile) 'guile-git))
-      ("guile-semver"  (ref '(gnu packages guile-xyz) 'guile-semver))
-      ("guile-lib"  (ref '(gnu packages guile-xyz) 'guile-lib))
-      ("guile-sqlite3" (ref '(gnu packages guile) 'guile-sqlite3))
-      ("guile-zlib" (ref '(gnu packages guile) 'guile-zlib))
-      ("guile-lzlib" (ref '(gnu packages guile) 'guile-lzlib))
-      ("guile-zstd" (ref '(gnu packages guile) 'guile-zstd))
-      ("guile-gcrypt"  (ref '(gnu packages gnupg) 'guile-gcrypt))
-      ("guile-gnutls"  (ref '(gnu packages tls) 'guile-gnutls))
-      ("disarchive" (ref '(gnu packages backup) 'disarchive))
-      ("guile-lzma" (ref '(gnu packages guile) 'guile-lzma))
-      ("gzip"       (ref '(gnu packages compression) 'gzip))
-      ("bzip2"      (ref '(gnu packages compression) 'bzip2))
-      ("xz"         (ref '(gnu packages compression) 'xz))
-      ("po4a"       (ref '(gnu packages gettext) 'po4a))
-      ("gettext"       (ref '(gnu packages gettext) 'gettext-minimal))
-      ("gcc-toolchain" (ref '(gnu packages commencement) 'gcc-toolchain))
-      (_            #f))))                        ;no such package
+  (and=> (assoc-ref %packages name) force))
 
 
 ;;;
@@ -239,9 +247,8 @@ record with the new file name."
                       #:optional (directory domain))
   "Return the locale data from 'po/DIRECTORY' in SOURCE, corresponding to
 DOMAIN, a gettext domain."
-  (define gettext
-    (module-ref (resolve-interface '(gnu packages gettext))
-                'gettext-minimal))
+  (define gettext-minimal
+    (specification->package "gettext-minimal"))
 
   (define build
     (with-imported-modules '((guix build utils))
@@ -257,7 +264,7 @@ DOMAIN, a gettext domain."
             (let ((gmo (string-append #$output "/" language "/LC_MESSAGES/"
                                       #$domain ".mo")))
               (mkdir-p (dirname gmo))
-              (invoke #+(file-append gettext "/bin/msgfmt")
+              (invoke #+(file-append gettext-minimal "/bin/msgfmt")
                       "-c" "--statistics" "--verbose"
                       "-o" gmo
                       (string-append po-directory "/" language ".po"))))
@@ -279,20 +286,19 @@ DOMAIN, a gettext domain."
   "Return the translated texinfo manuals built from SOURCE."
   (define po4a
     (specification->package "po4a"))
-  
-  (define gettext
-    (specification->package "gettext"))
+
+  (define gettext-minimal
+    (specification->package "gettext-minimal"))
 
   (define glibc-utf8-locales
-    (module-ref (resolve-interface '(gnu packages base))
-                'glibc-utf8-locales))
+    (specification->package "glibc-utf8-locales"))
 
   (define documentation
     (file-append* source "doc"))
 
   (define documentation-po
     (file-append* source "po/doc"))
-  
+
   (define build
     (with-imported-modules '((guix build utils) (guix build po))
       #~(begin
@@ -364,7 +370,7 @@ a list of extra files, such as '(\"contributing\")."
 
           (setenv "GUIX_LOCPATH"
                   #+(file-append glibc-utf8-locales "/lib/locale"))
-          (setenv "PATH" #+(file-append gettext "/bin"))
+          (setenv "PATH" #+(file-append gettext-minimal "/bin"))
           (setenv "LC_ALL" "en_US.UTF-8")
           (setlocale LC_ALL "en_US.UTF-8")
 
@@ -393,16 +399,13 @@ a list of extra files, such as '(\"contributing\")."
 (define (info-manual source)
   "Return the Info manual built from SOURCE."
   (define texinfo
-    (module-ref (resolve-interface '(gnu packages texinfo))
-                'texinfo))
+    (specification->package "texinfo"))
 
   (define graphviz
-    (module-ref (resolve-interface '(gnu packages graphviz))
-                'graphviz))
+    (specification->package "graphviz"))
 
   (define glibc-utf8-locales
-    (module-ref (resolve-interface '(gnu packages base))
-                'glibc-utf8-locales))
+    (specification->package "glibc-utf8-locales"))
 
   (define documentation
     (file-append* source "doc"))
@@ -585,8 +588,7 @@ instead of 'C'."
   "Return the 'guix' command such that it adds MODULES and DEPENDENCIES in its
 load path."
   (define glibc-utf8-locales
-    (module-ref (resolve-interface '(gnu packages base))
-                'glibc-utf8-locales))
+    (specification->package "glibc-utf8-locales"))
 
   (define module-directory
     ;; To minimize the number of 'stat' calls needed to locate a module,
@@ -1029,10 +1031,7 @@ itself."
                           ;; Include 'guix-daemon'.  XXX: Here we inject an
                           ;; older snapshot of guix-daemon, but that's a good
                           ;; enough approximation for now.
-                          #:daemon (module-ref (resolve-interface
-                                                '(gnu packages
-                                                      package-management))
-                                               'guix-daemon)
+                          #:daemon (specification->package "guix-daemon")
 
                           #:info (info-manual source)
                           #:miscellany (miscellaneous-files source)
author	Andreas Enge <andreas@enge.fr>	2023-04-17 19:17:39 +0200
committer	Andreas Enge <andreas@enge.fr>	2023-04-17 19:17:39 +0200
commit	216d7bdb738e05675bbb128d582851bdc9b85aaa (patch)
tree	0535efa1427ebc5b14ac10ccf03be17673a8c909
parent	d3c7ca3c40fd613cfb3fb8f41e8ea064b438414a (diff)
parent	50dd91bc30634c75c0001cfd38bbcc2fbbeb894e (diff)