diff options
| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-04-21 02:03:57 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-04-21 14:01:22 +0200 |
| commit | 2a20acf24b964e527b69f8b1111a3fdee1a56f68 (patch) | |
| tree | df1a8bc0673530f71b8c7d8892453d88bca8ef45 | |
| parent | 2babf3d7d70a52c3543500f09f31c4eaf7a5184e (diff) | |
gnu: bpp-popgen: Update to 2.4.1.
* gnu/packages/bioinformatics.scm (bpp-popgen): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 49 |
1 files changed, 22 insertions, 27 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c032d107cd..152cef2e01 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2296,35 +2296,30 @@ library. It is part of the Bio++ project.") (license license:cecill))) (define-public bpp-popgen - ;; The last release was in 2014 and the recommended way to install from source - ;; is to clone the git repository, so we do this. - ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page - (let ((commit "e472bac9b1a148803895d747cd6d0c5904f85d9f")) - (package - (name "bpp-popgen") - (version (string-append "2.2.0-1." (string-take commit 7))) - (source (origin - (method git-fetch) - (uri (git-reference - (url "http://biopp.univ-montp2.fr/git/bpp-popgen") - (commit commit))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "0yn82dzn1n5629nzja68xfrhi655709rjanyryb36vzkmymy6dw5")))) - (build-system cmake-build-system) - (arguments - `(#:parallel-build? #f - #:tests? #f)) ; There are no tests. - (inputs - (list bpp-core bpp-seq)) - (home-page "http://biopp.univ-montp2.fr") - (synopsis "Bio++ population genetics library") - (description - "Bio++ is a set of C++ libraries for Bioinformatics, including sequence + (package + (name "bpp-popgen") + (version "2.4.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BioPP/bpp-popgen") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0bz0fhrq3dri6a0hvfc3zlvrns8mrzzlnicw5pyfa812gc1qwfvh")))) + (build-system cmake-build-system) + (arguments + (list #:tests? #f)) ; There are no tests. + (inputs + (list bpp-core bpp-seq)) + (home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-popgen/html/") + (synopsis "Bio++ population genetics library") + (description + "Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. This library provides population genetics-related modules.") - (license license:cecill-c)))) + (license license:cecill-c))) (define-public bpp-seq (package |