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| author | Roel Janssen <roel@gnu.org> | 2020-11-18 16:48:25 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-12-09 12:12:21 +0100 |
| commit | 341ebaaa0172a3f17b6dbbba1717e4e31374445a (patch) | |
| tree | ae787b45b8ebe0b77130bab9d5ea25e9dd296483 | |
| parent | 6e396c4bff6c79befdc3e255b7d21c6af1774c5e (diff) | |
gnu: r-diffbind: Update to 3.0.7.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.7.
[propagated-inputs]: Add r-apeglm, r-ashr, and r-greylistchip; remove r-edger.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d8db2ba83b..ec2273ce10 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1687,29 +1687,31 @@ signal in the input, that lead to spurious peaks during peak calling.") (define-public r-diffbind (package (name "r-diffbind") - (version "2.16.2") + (version "3.0.7") (source (origin (method url-fetch) (uri (bioconductor-uri "DiffBind" version)) (sha256 (base32 - "11y9kigdikqcd0cnksh306nsaadak0kgivk7773mv3yszrxxwzj1")))) + "0irhqsi6rrkrkc7dhwmfpqfd0mnigs17027czcx8vgbrbra4lcvd")))) (properties `((upstream-name . "DiffBind"))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) (propagated-inputs `(("r-amap" ,r-amap) + ("r-apeglm" ,r-apeglm) + ("r-ashr" ,r-ashr) ("r-biocparallel" ,r-biocparallel) ("r-deseq2" ,r-deseq2) ("r-dplyr" ,r-dplyr) - ("r-edger" ,r-edger) ("r-genomicalignments" ,r-genomicalignments) ("r-genomicranges" ,r-genomicranges) ("r-ggplot2" ,r-ggplot2) ("r-ggrepel" ,r-ggrepel) ("r-gplots" ,r-gplots) + ("r-greylistchip" ,r-greylistchip) ("r-iranges" ,r-iranges) ("r-lattice" ,r-lattice) ("r-limma" ,r-limma) |