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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-04-29 16:34:17 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-04-29 20:28:08 +0200 |
| commit | 376c52a949d86f5da5f665cc0b5f852adb8edc1c (patch) | |
| tree | 47147f64885e936c85ca24ceefd3d48931e077ba | |
| parent | 46d78bf04508617cd14c17235c89bc831309be45 (diff) | |
gnu: r-rliger: Strip jar timestamps.
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase
'strip-jar-timestamps; remove trailing #T; add ant-build-system modules.
[source]: Simplify snippet.
[native-inputs]: Add zip.
| -rw-r--r-- | gnu/packages/cran.scm | 22 |
1 files changed, 14 insertions, 8 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 36a25e9611..329cf7c1e9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -24654,21 +24654,26 @@ multiple plots.") "16dzwwcpw6n78pxlc5w3kraigki35ix7zhd2cbx5f3y60bbkhlmx")) (modules '((guix build utils))) (snippet - '(begin - (delete-file "inst/java/ModularityOptimizer.jar") - #t)))) + '(delete-file "inst/java/ModularityOptimizer.jar")))) (build-system r-build-system) (arguments - `(#:phases - (modify-phases %standard-phases + (list + #:modules '((guix build r-build-system) + ((guix build ant-build-system) #:prefix ant:) + (guix build utils)) + #:imported-modules `((guix build ant-build-system) + ,@%r-build-system-modules) + #:phases + '(modify-phases %standard-phases (add-after 'unpack 'build-java-part (lambda* (#:key inputs #:allow-other-keys) (invoke "unzip" (assoc-ref inputs "optimizer-src")) (for-each (lambda (file) (invoke "javac" file)) (find-files "." "\\.java$")) (apply invoke "jar" "cf" "inst/java/ModularityOptimizer.jar" - (find-files "." "\\.class$")) - #t))))) + (find-files "." "\\.class$")))) + (add-after 'install 'strip-jar-timestamps + (assoc-ref ant:%standard-phases 'strip-jar-timestamps))))) (propagated-inputs (list r-cowplot r-dosnow @@ -24702,7 +24707,8 @@ multiple plots.") (base32 "01hmm6sapcmldvayknqx2w4cav3qv71mwwkdkwj4qgq6dss09g18")))) ("unzip" ,unzip) - ("r-knitr" ,r-knitr))) ; for vignettes + ("zip" ,zip) + ("r-knitr" ,r-knitr))) ; for vignettes (home-page "https://github.com/MacoskoLab/liger") (synopsis "Integrate and analyze multiple single-cell datasets") (description |