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authorRicardo Wurmus <rekado@elephly.net>2018-11-27 23:23:20 +0100
committerRicardo Wurmus <rekado@elephly.net>2018-11-27 23:56:23 +0100
commit41ffc214e4839aa50e9957388749772e91a3f533 (patch)
tree50bf67a563f2262faec42adad65f216ee767f525
parent4236959de8200bba4eeb2c23519fc736b3c50a23 (diff)
gnu: Add r-chipexoqual.
* gnu/packages/bioconductor.scm (r-chipexoqual): New variable.
-rw-r--r--gnu/packages/bioconductor.scm38
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 95c722ac40..e7f11dead3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1030,3 +1030,41 @@ maps.")
"This package provides tools to parse Illumina Sequence Analysis
Viewer (SAV) files, access data, and generate QC plots.")
(license license:agpl3+)))
+
+(define-public r-chipexoqual
+ (package
+ (name "r-chipexoqual")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ChIPexoQual" version))
+ (sha256
+ (base32
+ "1773bpiybn4g9jlv46z29x19q4dpcvn7lairr3lq5pdqbqmz5hnp"))))
+ (properties `((upstream-name . "ChIPexoQual")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocparallel" ,r-biocparallel)
+ ("r-biovizbase" ,r-biovizbase)
+ ("r-broom" ,r-broom)
+ ("r-data-table" ,r-data-table)
+ ("r-dplyr" ,r-dplyr)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-hexbin" ,r-hexbin)
+ ("r-iranges" ,r-iranges)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rmarkdown" ,r-rmarkdown)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scales" ,r-scales)
+ ("r-viridis" ,r-viridis)))
+ (home-page "https://github.com/keleslab/ChIPexoQual")
+ (synopsis "Quality control pipeline for ChIP-exo/nexus data")
+ (description
+ "This package provides a quality control pipeline for ChIP-exo/nexus
+sequencing data.")
+ (license license:gpl2+)))