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authorzimoun <zimon.toutoune@gmail.com>2021-05-21 22:26:12 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-05-31 15:38:59 +0200
commit45b6db4fb4b6963be6fca4dc747d763673edce3c (patch)
treef8269783699f7149654d331f2ef281d57df6085d
parent043c309d154a69455e0fa7624afa98b912bffb6d (diff)
gnu: r-bamsignals: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here... * gnu/packages/bioconductor.scm (r-bamsignals): ...to here.
-rw-r--r--gnu/packages/bioconductor.scm30
-rw-r--r--gnu/packages/bioinformatics.scm30
2 files changed, 30 insertions, 30 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cb42c0bed2..382e3b6d28 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2109,6 +2109,36 @@ standalone, be utilized in other packages, or be wrapped up in higher-level
classes.")
(license license:gpl2+)))
+(define-public r-bamsignals
+ (package
+ (name "r-bamsignals")
+ (version "1.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bamsignals" version))
+ (sha256
+ (base32
+ "0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rhtslib" ,r-rhtslib)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/bamsignals")
+ (synopsis "Extract read count signals from bam files")
+ (description
+ "This package efficiently obtains count vectors from indexed bam
+files. It counts the number of nucleotide sequence reads in given genomic
+ranges and it computes reads profiles and coverage profiles. It also handles
+paired-end data.")
+ (license license:gpl2+)))
+
(define-public r-biobase
(package
(name "r-biobase")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fd83c4dd48..998541434f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8046,36 +8046,6 @@ characteristic tag shift values in these assays.")
secondary structure and comparative analysis in R.")
(license license:gpl3+)))
-(define-public r-bamsignals
- (package
- (name "r-bamsignals")
- (version "1.22.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "bamsignals" version))
- (sha256
- (base32
- "0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-rcpp" ,r-rcpp)
- ("r-rhtslib" ,r-rhtslib)
- ("r-zlibbioc" ,r-zlibbioc)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/bamsignals")
- (synopsis "Extract read count signals from bam files")
- (description
- "This package efficiently obtains count vectors from indexed bam
-files. It counts the number of nucleotide sequence reads in given genomic
-ranges and it computes reads profiles and coverage profiles. It also handles
-paired-end data.")
- (license license:gpl2+)))
-
(define-public r-rcas
(package
(name "r-rcas")