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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-01-25 15:34:23 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-01-28 15:07:55 +0100 |
| commit | 6d3cafa086b380b371d093906390ad610170ff2b (patch) | |
| tree | f27f12dd27080c0890d06e04cd9fe6d41465e0b4 | |
| parent | 09ab0d42b00d38abb57dd8218062e797d5117080 (diff) | |
gnu: Add trf.
* gnu/packages/bioinformatics.scm (trf): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8514306f94..1aa60a0ae7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2822,6 +2822,30 @@ sequencing data. It uses paired-ends and split-reads to sensitively and accurately delineate genomic rearrangements throughout the genome.") (license license:gpl3+))) +(define-public trf + (package + (name "trf") + (version "4.09.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Benson-Genomics-Lab/TRF") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0fhwr4s1mf8nw8fr5imwjvjr42b59p97zr961ifm8xl1bajz4wpg")))) + (build-system gnu-build-system) + (home-page "https://github.com/Benson-Genomics-Lab/TRF") + (synopsis "Tandem Repeats Finder: a program to analyze DNA sequences") + (description "A tandem repeat in DNA is two or more adjacent, approximate +copies of a pattern of nucleotides. Tandem Repeats Finder is a program to +locate and display tandem repeats in DNA sequences. In order to use the +program, the user submits a sequence in FASTA format. The output consists of +two files: a repeat table file and an alignment file. Submitted sequences may +be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 +bases are detected.") + (license license:agpl3+))) + (define-public diamond (package (name "diamond") |