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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 12:20:03 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 12:27:16 +0100 |
| commit | 70a3a76ba7aed0c0bed4ce7ac4ed3fca9abc2c45 (patch) | |
| tree | 7f728d08618c2312dcd7f7d77cd2d42506294212 | |
| parent | 48f27914966b00958dc9d4b26fd24a6a7f1874d1 (diff) | |
gnu: r-scran: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.1.
[propagated-inputs]: Add r-biocneighbors; remove r-dt, r-fnn, r-ggplot2,
r-shiny, and r-viridis.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 4 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f359983bf2..fa572d4a3d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10995,26 +10995,24 @@ quality control.") (define-public r-scran (package (name "r-scran") - (version "1.8.4") + (version "1.10.1") (source (origin (method url-fetch) (uri (bioconductor-uri "scran" version)) (sha256 (base32 - "17vq9vb9ak7n4mcqpwnm9x3z91vmr7xnsgj8f45b8dbj7m0v126j")))) + "1viyzrwfm9vccsf54c6g7k1dn7skkfx4ml1jy12q67wa20sx8l03")))) (build-system r-build-system) (propagated-inputs `(("r-beachmat" ,r-beachmat) ("r-biocgenerics" ,r-biocgenerics) + ("r-biocneighbors" ,r-biocneighbors) ("r-biocparallel" ,r-biocparallel) ("r-delayedarray" ,r-delayedarray) ("r-delayedmatrixstats" ,r-delayedmatrixstats) - ("r-dt" ,r-dt) ("r-dynamictreecut" ,r-dynamictreecut) ("r-edger" ,r-edger) - ("r-fnn" ,r-fnn) - ("r-ggplot2" ,r-ggplot2) ("r-igraph" ,r-igraph) ("r-limma" ,r-limma) ("r-matrix" ,r-matrix) @@ -11022,11 +11020,9 @@ quality control.") ("r-rhdf5lib" ,r-rhdf5lib) ("r-s4vectors" ,r-s4vectors) ("r-scater" ,r-scater) - ("r-shiny" ,r-shiny) ("r-singlecellexperiment" ,r-singlecellexperiment) ("r-statmod" ,r-statmod) - ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-viridis" ,r-viridis))) + ("r-summarizedexperiment" ,r-summarizedexperiment))) (home-page "https://bioconductor.org/packages/scran") (synopsis "Methods for single-cell RNA-Seq data analysis") (description "This package implements a variety of low-level analyses of |