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authorRicardo Wurmus <rekado@elephly.net>2022-01-05 14:26:14 +0100
committerRicardo Wurmus <rekado@elephly.net>2022-01-05 21:17:58 +0100
commit734e1b185fc498667e04eb397da7ead2349bd26f (patch)
tree19011f638dc1ade0cec2de0f8884666b77a0b3f6
parentd4e0534c4f0f811f06a48b0bea9966bb93ee08e8 (diff)
gnu: r-valr: Update to 0.6.4.
* gnu/packages/cran.scm (r-valr): Move from here... * gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4. [propagated-inputs]: Add r-rtracklayer.
-rw-r--r--gnu/packages/bioconductor.scm33
-rw-r--r--gnu/packages/cran.scm31
2 files changed, 33 insertions, 31 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 71037a86e2..8463e5874d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4766,6 +4766,39 @@ provided as a matrix which can be used as an offset for different expression
of gene-level counts.")
(license license:gpl2+)))
+;; This is a CRAN package, but it depends on a Bioconductor package.
+(define-public r-valr
+ (package
+ (name "r-valr")
+ (version "0.6.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "valr" version))
+ (sha256
+ (base32
+ "0dd41irvibh6rwi52bw4zg4m7wpyihlp1kdkb8fdji3csw2fiz4k"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-broom
+ r-dplyr
+ r-ggplot2
+ r-rcpp
+ r-readr
+ r-rlang
+ r-rtracklayer ;bioconductor package
+ r-stringr
+ r-tibble))
+ (native-inputs
+ (list r-knitr))
+ (home-page "https://github.com/rnabioco/valr")
+ (synopsis "Genome interval arithmetic in R")
+ (description
+ "This package enables you to read and manipulate genome intervals and
+signals. It provides functionality similar to command-line tool suites within
+R, enabling interactive analysis and visualization of genome-scale data.")
+ (license license:expat)))
+
(define-public r-variantannotation
(package
(name "r-variantannotation")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 448ac5b724..7abd3c5233 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15677,37 +15677,6 @@ can also be used to join clusters obtained from affinity propagation. Various
plotting functions are available for analyzing clustering results.")
(license license:gpl2+)))
-(define-public r-valr
- (package
- (name "r-valr")
- (version "0.6.3")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "valr" version))
- (sha256
- (base32
- "1lzdlw0mw06rymyjzwf4i8rx1z6zxpwxxqfsc9ggqlnhq6bfhy93"))))
- (build-system r-build-system)
- (propagated-inputs
- (list r-broom
- r-dplyr
- r-ggplot2
- r-rcpp
- r-readr
- r-rlang
- r-stringr
- r-tibble))
- (native-inputs
- (list r-knitr))
- (home-page "https://github.com/rnabioco/valr")
- (synopsis "Genome interval arithmetic in R")
- (description
- "This package enables you to read and manipulate genome intervals and
-signals. It provides functionality similar to command-line tool suites within
-R, enabling interactive analysis and visualization of genome-scale data.")
- (license license:expat)))
-
(define-public r-rematch2
(package
(name "r-rematch2")