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| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-10-08 21:33:43 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-10-08 21:38:17 +1000 |
| commit | 9602e3cce95264d563804d372f44a0d88bad3e9f (patch) | |
| tree | 2f6d8d9296db72a98a275af5f49edb81453ae4ab | |
| parent | f803f775d244b4e3975ab42b9610d12b94f6e958 (diff) | |
gnu: python2-dendropy: Fix tests.
* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched
source.
[arguments]: Use nose to run tests.
[native-inputs]: Add python2-nose.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 76e6c310ef..02ed8daac7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1972,7 +1972,25 @@ trees (phylogenies) and characters.") (let ((base (package-with-python2 (strip-python2-variant python-dendropy)))) (package (inherit base) + ;; Do not use same source as 'python-dendropy' because the patched + ;; failing tests do not occur on Python 2. + (source + (origin + (method url-fetch) + (uri (pypi-uri "DendroPy" (package-version base))) + (sha256 + (base32 + "1jfz7gp18wph311w1yygbvjanb3n5mdqal439bb6myw41dwb5m63")))) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (replace 'check + ;; There is currently a test failure that only happens on some + ;; systems, and only using "setup.py test" + (lambda _ (zero? (system* "nosetests"))))))) (native-inputs `(("python2-setuptools" ,python2-setuptools) + ("python2-nose" ,python2-nose) ,@(package-native-inputs base)))))) |