diff options
| author | zimoun <zimon.toutoune@gmail.com> | 2021-05-21 22:26:15 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-05-31 15:39:00 +0200 |
| commit | b6e84d30ebd5b5bd1bb1027a6199601b96580fa9 (patch) | |
| tree | 2214b8e05e0c7968298fd24cab5242ff7979809f | |
| parent | bf8f50295696a95a0ae3dca14188709b4330efac (diff) | |
gnu: r-tximport: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-tximport): Move from here...
* gnu/packages/bioconductor.scm (r-tximport): ...to here.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
2 files changed, 24 insertions, 24 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f66ba6ce5f..f276749abf 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4114,6 +4114,30 @@ dependencies between GO terms can be implemented and applied.") ;; Any version of the LGPL applies. (license license:lgpl2.1+))) +(define-public r-tximport + (package + (name "r-tximport") + (version "1.18.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "tximport" version)) + (sha256 + (base32 + "1nxnlvl4iv2392xa72j0lzy2xnb3vrvyhfrdj9l54znwkrryyq34")))) + (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/tximport") + (synopsis "Import and summarize transcript-level estimates for gene-level analysis") + (description + "This package provides tools to import transcript-level abundance, +estimated counts and transcript lengths, and to summarize them into matrices +for use with downstream gene-level analysis packages. Average transcript +length, weighted by sample-specific transcript abundance estimates, is +provided as a matrix which can be used as an offset for different expression +of gene-level counts.") + (license license:gpl2+))) + (define-public r-variantannotation (package (name "r-variantannotation") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2fc46c7978..fcaed708a6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8164,30 +8164,6 @@ bound and non bound genomic regions to accurately identify transcription factors bound at the specific regions.") (license license:gpl2+))) -(define-public r-tximport - (package - (name "r-tximport") - (version "1.18.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "tximport" version)) - (sha256 - (base32 - "1nxnlvl4iv2392xa72j0lzy2xnb3vrvyhfrdj9l54znwkrryyq34")))) - (build-system r-build-system) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/tximport") - (synopsis "Import and summarize transcript-level estimates for gene-level analysis") - (description - "This package provides tools to import transcript-level abundance, -estimated counts and transcript lengths, and to summarize them into matrices -for use with downstream gene-level analysis packages. Average transcript -length, weighted by sample-specific transcript abundance estimates, is -provided as a matrix which can be used as an offset for different expression -of gene-level counts.") - (license license:gpl2+))) - (define-public r-rhdf5filters (package (name "r-rhdf5filters") |