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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 16:13:05 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 17:42:17 +0200 |
| commit | b9b8b447ec63df1bec74d60bc5f0020b0d79bd28 (patch) | |
| tree | d6cd43b50b269e1155f065ab19fbedfb268642f4 | |
| parent | 8830664d614f6a84df6f5153eee85761a20d24ed (diff) | |
gnu: Add r-wiggleplotr.
* gnu/packages/bioconductor.scm (r-wiggleplotr): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b09d1957d8..02688ce473 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4064,3 +4064,35 @@ data for high-throughput, untargeted analyte profiling.") "Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.") (license license:artistic2.0))) + +(define-public r-wiggleplotr + (package + (name "r-wiggleplotr") + (version "1.6.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "wiggleplotr" version)) + (sha256 + (base32 + "12fhbskkjwv4d9bdy3gab8n9pcf7qpwiwgx0248as445vfw8dil3")))) + (build-system r-build-system) + (propagated-inputs + `(("r-assertthat" ,r-assertthat) + ("r-cowplot" ,r-cowplot) + ("r-dplyr" ,r-dplyr) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-iranges" ,r-iranges) + ("r-purrr" ,r-purrr) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/wiggleplotr/") + (synopsis "Make read coverage plots from BigWig files") + (description + "This package provides tools to visualize read coverage from sequencing +experiments together with genomic annotations (genes, transcripts, peaks). +Introns of long transcripts can be rescaled to a fixed length for better +visualization of exonic read coverage.") + (license license:asl2.0))) |