diff options
| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-04-27 12:56:14 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-04-27 16:18:27 +0200 |
| commit | be2ead307371ae03d0b56652fc40bec11869b8a1 (patch) | |
| tree | cd6e8fee558cbabdcab03304bc2951993659ab82 | |
| parent | 851770312fc3aed467494112174205388c49afc2 (diff) | |
gnu: Add r-affyrnadegradation.
* gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioconductor.scm | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bbbe649320..088d50f7f5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1769,6 +1769,31 @@ impute GReX can be trained with a training dataset where the real total expression values are known.") (license license:gpl3))) +(define-public r-affyrnadegradation + (package + (name "r-affyrnadegradation") + (version "1.40.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AffyRNADegradation" version)) + (sha256 + (base32 + "00hzr62xn1i1w4g8krsxhivzwn8hd7hwhkdxyrpz6cs9vgr4x9kd")))) + (properties `((upstream-name . "AffyRNADegradation"))) + (build-system r-build-system) + (propagated-inputs (list r-affy)) + (home-page "https://bioconductor.org/packages/AffyRNADegradation") + (synopsis + "Analyze and correct probe positional bias in data due to RNA degradation") + (description + "The @code{AffyRNADegradation} package helps with the assessment and +correction of RNA degradation effects in Affymetrix 3 expression arrays. The +parameter @code{d} gives a robust and accurate measure of RNA integrity. The +correction removes the probe positional bias, and thus improves comparability +of samples that are affected by RNA degradation.") + ;; the R file header specifies GPL2 or later + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") |