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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-12-02 10:02:54 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-12-02 10:03:07 +0100 |
| commit | c2c63a00de414124a1ca1a84f2cc3e8785ad243d (patch) | |
| tree | d857f63763aa655103067c8775444edab4964ee8 | |
| parent | bef86fed3e34ac62fba178c46cd9732526c2b9bf (diff) | |
gnu: Add r-scdblfinder.
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bcd26c7181..6fd51b971c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4193,6 +4193,46 @@ differential expression analysis, RNAseq data and related problems.") ;; Any version of the LGPL (license license:lgpl3+))) +(define-public r-scdblfinder + (package + (name "r-scdblfinder") + (version "1.8.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "scDblFinder" version)) + (sha256 + (base32 "0wzmmcsnjybgzbc5rn4i72n26j9n59dfy1zg8ij0q8p4276jplsd")))) + (properties `((upstream-name . "scDblFinder"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biocneighbors" ,r-biocneighbors) + ("r-biocparallel" ,r-biocparallel) + ("r-biocsingular" ,r-biocsingular) + ("r-bluster" ,r-bluster) + ("r-delayedarray" ,r-delayedarray) + ("r-igraph" ,r-igraph) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-s4vectors" ,r-s4vectors) + ("r-scater" ,r-scater) + ("r-scran" ,r-scran) + ("r-scuttle" ,r-scuttle) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-xgboost" ,r-xgboost))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/plger/scDblFinder") + (synopsis "Detect multiplets in single-cell RNA sequencing data") + (description + "The scDblFinder package gathers various methods for the detection and +handling of doublets/multiplets in single-cell RNA sequencing data (i.e. +multiple cells captured within the same droplet or reaction volume). It +includes methods formerly found in the scran package, and the new fast and +comprehensive scDblFinder method.") + (license license:gpl3))) + (define-public r-seqlogo (package (name "r-seqlogo") |