diff options
| author | Hong Li <hli@mdc-berlin.de> | 2022-03-29 07:04:02 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-04-06 11:43:46 +0200 |
| commit | e3e3381fdbc56f351063d9b4a49e99645b20d7d3 (patch) | |
| tree | 2bb1f1416f9026b7510e09d0567631fa200485ae | |
| parent | 730ac9ab85b4a7662558d5158b1a7e02afdd65c3 (diff) | |
gnu: Add r-rnaseqdtu.
* gnu/packages/bioinformatics.scm (r-rnaseqdtu): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e9778831d2..106b25a50b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9009,6 +9009,43 @@ for analyzing gene-level association tests in meta-analyses for binary trait.") (license license:gpl3))) +(define-public r-rnaseqdtu + (let ((commit "5bee1e769d2e1dc6a3f1cecb78078050eeb5b9ac") + (revision "1")) + (package + (name "r-rnaseqdtu") + (version (git-version "2.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mikelove/rnaseqDTU/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0jfi1ydsk8m5nadwnih48v87nnxdc7s3f0pny4axmnj40dd42as0")))) + (properties `((upstream-name . "rnaseqDTU"))) + (build-system r-build-system) + (propagated-inputs + (list r-deseq2 + r-devtools + r-dexseq + r-drimseq + r-edger + r-rafalib + r-stager)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mikelove/rnaseqDTU/") + (synopsis "RNA-seq workflow for differential transcript usage") + (description + "This package provides an RNA-seq workflow for differential transcript +usage (DTU) following Salmon quantification. This workflow performs a DTU +analysis on simulated data. It also shows how to use stageR to perform +two-stage testing of DTU, a statistical framework to screen at the gene level +and then confirm which transcripts within the significant genes show evidence +of DTU.") + (license license:artistic2.0)))) + (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) |