diff options
| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-17 11:42:01 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-07-01 10:28:21 +0200 |
| commit | 4c294ae7fb7fbb881bff7fbc095a1072e7a2058b (patch) | |
| tree | 5d66deb0ec3983a67e7bbd2f4e450b24f15b0b7c /gnu/packages/bioconductor.scm | |
| parent | b7e414982d4d47f3a0e42ea177b9797dc4880e91 (diff) | |
gnu: Add r-anaquin.
* gnu/packages/bioconductor.scm (r-anaquin): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 28000c70f1..3b8505c0ad 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2063,6 +2063,36 @@ This allows @code{AMARETTO} to identify novel cancer driver genes directing canonical cancer pathways.") (license license:asl2.0))) +(define-public r-anaquin + (package + (name "r-anaquin") + (version "2.20.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Anaquin" version)) + (sha256 + (base32 + "1jgpnls2djl1yzvnk64qc83mljmlci7wflwkza3wr0sv6r47b0dd")))) + (properties `((upstream-name . "Anaquin"))) + (build-system r-build-system) + (propagated-inputs + (list r-deseq2 + r-ggplot2 + r-knitr + r-locfit + r-plyr + r-qvalue + r-rocr)) + (native-inputs (list r-knitr)) + (home-page "https://www.sequinstandards.com/") + (synopsis "Statistical analysis of sequins") + (description + "The project is intended to support the use of @dfn{sequins}(synthetic +sequencing spike-in controls) owned and made available by the Garvan Institute +of Medical Research. The goal is to provide a standard open source library for +quantitative analysis, modelling and visualization of spike-in controls.") + (license license:bsd-3))) + (define-public r-aneufinder (package (name "r-aneufinder") |