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authorRicardo Wurmus <rekado@elephly.net>2019-09-15 20:53:21 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-09-15 20:53:21 +0200
commit5094aa94724fd2111dbd7520ab2f21a4218523ae (patch)
tree55e2a14d44755c7d160b99bbb2052a29779dbf69 /gnu/packages/bioconductor.scm
parent5cf940de21a454c0556c019760835f2bb9dcbe0c (diff)
gnu: Add r-affycompatible.
* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a87bcebdef..83f8343524 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1002,6 +1002,34 @@ packages.")
measures for Affymetrix Oligonucleotide Arrays.")
(license license:gpl2+)))
+(define-public r-affycompatible
+ (package
+ (name "r-affycompatible")
+ (version "1.44.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AffyCompatible" version))
+ (sha256
+ (base32
+ "1zi96qa6vkgwvvy5cn6c3p1kbfsaz74zsw2kjxarz5qs744f0xvs"))))
+ (properties
+ `((upstream-name . "AffyCompatible")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-rcurl" ,r-rcurl)
+ ("r-xml" ,r-xml)))
+ (home-page "https://bioconductor.org/packages/AffyCompatible/")
+ (synopsis "Work with Affymetrix GeneChip files")
+ (description
+ "This package provides an interface to Affymetrix chip annotation and
+sample attribute files. The package allows an easy way for users to download
+and manage local data bases of Affynmetrix NetAffx annotation files. It also
+provides access to @dfn{GeneChip Operating System} (GCOS) and @dfn{GeneChip
+Command Console} (AGCC)-compatible sample annotation files.")
+ (license license:artistic2.0)))
+
(define-public r-annotate
(package
(name "r-annotate")