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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-17 11:09:20 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-06-30 15:29:45 +0200 |
| commit | dd74da619059465d67a804948e750c0470cfc6f8 (patch) | |
| tree | 362dd594adf07438b78b7f5b5472db7b1289ad52 /gnu/packages/bioconductor.scm | |
| parent | 8c85cc74f0293eb747f981dd63cfec3c068325de (diff) | |
gnu: Add r-amountain.
* gnu/packages/bioconductor.scm (r-amountain): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f58b90f4b5..20f277b119 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1987,6 +1987,30 @@ using the linear model features implemented in limma. Standard Bioconductor objects are used so that other packages could be used as well.") (license license:gpl3))) +(define-public r-amountain + (package + (name "r-amountain") + (version "1.22.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AMOUNTAIN" version)) + (sha256 + (base32 + "0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54")))) + (properties `((upstream-name . "AMOUNTAIN"))) + (build-system r-build-system) + (inputs (list gsl)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AMOUNTAIN") + (synopsis "Modules for multilayer weighted gene co-expression networks") + (description + "This package provides a pure data-driven gene network, @dfn{WGCN}(weighted +gene co-expression network) could be constructed only from expression profile. +Different layers in such networks may represent different time points, multiple +conditions or various species. @code{AMOUNTAIN} aims to search active modules +in multi-layer WGCN using a continuous optimization approach.") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") |