diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:19:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:23:20 +0100 |
| commit | 40a650571155933794523279adc435fd7d84fd2a (patch) | |
| tree | 3cc7124aaa235d8d040d7f7e3b5def5538291678 /gnu/packages/bioinformatics.scm | |
| parent | 66e35ce63b346f5f13b2d48a76bc0da14637c58c (diff) | |
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 0 insertions, 31 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 82f45b30c3..1e0abb3f42 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7859,37 +7859,6 @@ dependencies between GO terms can be implemented and applied.") genome data packages and support for efficient SNP representation.") (license license:artistic2.0))) -(define-public r-bsgenome-hsapiens-1000genomes-hs37d5 - (package - (name "r-bsgenome-hsapiens-1000genomes-hs37d5") - (version "0.99.1") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Hsapiens.1000genomes.hs37d5_" - version ".tar.gz")) - (sha256 - (base32 - "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr")))) - (properties - `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/") - (synopsis "Full genome sequences for Homo sapiens") - (description - "This package provides full genome sequences for Homo sapiens from -1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.") - (license license:artistic2.0))) - (define-public r-impute (package (name "r-impute") |