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authorzimoun <zimon.toutoune@gmail.com>2021-05-21 22:25:37 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-05-31 15:34:44 +0200
commit537d48d8695cf54da8957277aaac12b3991167c8 (patch)
tree28cc7a528dc495516d52861b342f085b99b1d7fb /gnu/packages/bioinformatics.scm
parent90bbab5cff337c522003adde870f127179f25f3d (diff)
gnu: r-bsgenome: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm31
1 files changed, 0 insertions, 31 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e78769b1d3..7a55ebd559 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7976,37 +7976,6 @@ including VCF header and contents in RDF and JSON.")
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
-(define-public r-bsgenome
- (package
- (name "r-bsgenome")
- (version "1.58.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "BSgenome" version))
- (sha256
- (base32
- "1gbvmxr6r57smgvhqgwspbcnwyk4hsfkxkpzzcs6470q03zfb4wq"))))
- (properties
- `((upstream-name . "BSgenome")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-biostrings" ,r-biostrings)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-matrixstats" ,r-matrixstats)
- ("r-rsamtools" ,r-rsamtools)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-s4vectors" ,r-s4vectors)
- ("r-xvector" ,r-xvector)))
- (home-page "https://bioconductor.org/packages/BSgenome")
- (synopsis "Infrastructure for Biostrings-based genome data packages")
- (description
- "This package provides infrastructure shared by all Biostrings-based
-genome data packages and support for efficient SNP representation.")
- (license license:artistic2.0)))
-
(define-public r-impute
(package
(name "r-impute")