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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-05-12 22:27:17 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-05-12 22:27:17 +0200 |
| commit | 7da3ca1bd70a9013c436a7e97eabe21d06d081fa (patch) | |
| tree | e6b664fe9c6eade3e6db63cbb4ee4f4222b3d85e /gnu/packages/bioinformatics.scm | |
| parent | 7a199bb74c263ee609ff5468db6501eb20820bde (diff) | |
gnu: methyldackel: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.6.1.
[arguments]: Set LIBBIGWIG variable instead of patching Makefile.
[inputs]: Replace htslib-1.9 with htslib.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 4 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c798cc5e72..68ba0b15fa 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17844,7 +17844,7 @@ patterns.") (define-public methyldackel (package (name "methyldackel") - (version "0.5.1") + (version "0.6.1") (source (origin (method git-fetch) (uri (git-reference @@ -17853,7 +17853,7 @@ patterns.") (file-name (git-file-name name version)) (sha256 (base32 - "1sfhf2ap75qxpnmy1ifgmxqs18rq8mah9mcgkby73vc6h0sw99ws")))) + "06kj76pyhzxfcjcpm840a3km3fa9994kfq4asglnb228pwak326z")))) (build-system gnu-build-system) (arguments (list @@ -17861,18 +17861,17 @@ patterns.") #:make-flags #~(list "CC=gcc" "CFLAGS=-fcommon" + "LIBBIGWIG=-lBigWig" (string-append "prefix=" #$output "/bin/")) #:phases '(modify-phases %standard-phases (replace 'configure (lambda _ (substitute* "Makefile" - (("-lhts ") "-lhts -lBigWig ") (("install MethylDackel \\$\\(prefix\\)" match) (string-append "install -d $(prefix); " match)))))))) (inputs - (list curl ; XXX: needed by libbigwig - htslib-1.9 libbigwig zlib)) + (list curl htslib libbigwig zlib)) ;; Needed for tests (native-inputs (list python-wrapper)) |