diff options
| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-06-23 17:43:54 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-06-29 22:25:35 +0200 |
| commit | 94ac93042f09b4ba68b7b64ed1feeebd3dab1ea4 (patch) | |
| tree | 440aa0e4bd78c3d291726406c11199d9255650d2 /gnu/packages/bioinformatics.scm | |
| parent | 06d80005917291f5e945ee774d9cd3a3eb8cb979 (diff) | |
gnu: Add rscape.
* gnu/packages/bioinformatics.scm (rscape): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0999d066bf..f3ea86544d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17253,6 +17253,30 @@ information... The package can also be used to extract data from @code{.loom} files.") (license license:expat)))) +(define-public rscape + (package + (name "rscape") + (version "2.0.0.q") + (source (origin + (method url-fetch) + (uri (string-append "http://eddylab.org/software/rscape/" + "rscape_v" version ".tar.gz")) + (sha256 + (base32 + "1jabvm3fzh8iy4803ns12v1fsy28x6wdy8wx4ik8y0mfac4h787q")))) + (build-system gnu-build-system) + (propagated-inputs (list gsl openmpi)) + (native-inputs (list automake autoconf)) + (home-page "https://github.com/EddyRivasLab/R-scape") + (synopsis "RNA structural covariation above phylogenetic expectation") + (description + "R-scape discovers RNA secondary structure consensus elements. +These elements include riboswitches and ribozymes. It utilizes probabilistic +modeling of sequence alignments, explicitly considering folding dependencies. +The tool enables the de novo search for new structural elements and +facilitates comparative analysis of known RNA families.") + (license license:bsd-3))) + (define-public r-seurat-utils (let ((commit "0b6f5b548a49148cfbeaa654e8a618c0a020afa5") (revision "1")) |