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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-01-11 14:15:04 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-01-11 14:19:53 +0100 |
| commit | 9966f98b1b4e17b8a80865ad1e1938aff703bdfe (patch) | |
| tree | 1fa995781b6d5f2dd6bd0f5b1de495e41d589520 /gnu/packages/bioinformatics.scm | |
| parent | 5b200dbfb0714016b3731ef288b7821f30ec2524 (diff) | |
gnu: Add htslib-for-stringtie.
* gnu/packages/bioinformatics.scm (htslib-for-stringtie): New variable.
* gnu/packages/patches/htslib-for-stringtie.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 487c43a2da..2b9a27d44b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4884,6 +4884,18 @@ data. It also provides the @command{bgzip}, @command{htsfile}, and (native-inputs `(("perl" ,perl))))) +(define htslib-for-stringtie + (package + (inherit htslib) + (source (origin + (inherit (package-source htslib)) + (patches + (search-patches "htslib-for-stringtie.patch")))) + (arguments + `(#:configure-flags '("--with-libdeflate"))) + (inputs + (list bzip2 libdeflate openssl)))) + (define-public idr (package (name "idr") |