diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2021-12-03 14:54:42 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-12-03 14:55:38 +0100 |
| commit | b8d6e77476f9515e53cd00c007d6f4c565a3e99d (patch) | |
| tree | e162a3465537d854234649c69c7678158c26ffe0 /gnu/packages/bioinformatics.scm | |
| parent | d0aa14a43dec5dbfcf950d77e07725de46fa6139 (diff) | |
gnu: python-ont-fast5-api: Update to 4.0.0.
* gnu/packages/bioinformatics.scm (python-ont-fast5-api): Update to 4.0.0.
[source]: Remove bundled plugin binaries.
[arguments]: Install plugin from inputs.
[inputs]: Add vbz-compression.
[propagated-inputs]: Remove python-six; add python-packaging.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 21 |
1 files changed, 18 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d180db012e..cb4f1b345a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13896,7 +13896,7 @@ effective when applied to the signal dataset.") (define-public python-ont-fast5-api (package (name "python-ont-fast5-api") - (version "1.4.4") + (version "4.0.0") (source (origin (method git-fetch) @@ -13906,12 +13906,27 @@ effective when applied to the signal dataset.") (file-name (git-file-name name version)) (sha256 (base32 - "03cbq4zbbwhll8ml2m9k8sa31mirsvcbjkrq1yna0kkzz9fad5fm")))) + "01hj4751j424lzic2sc4bz1f8w7i7fpkjpy3rgghdyl5lyfyb4s4")) + (modules '((guix build utils))) + (snippet + '(delete-file-recursively "ont_fast5_api/vbz_plugin")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'copy-plugin + (lambda* (#:key inputs #:allow-other-keys) + (mkdir-p "ont_fast5_api/vbz_plugin/") + (install-file (string-append + (assoc-ref inputs "vbz-compression") + "/hdf5/lib/plugin/libvbz_hdf_plugin.so") + "ont_fast5_api/vbz_plugin/")))))) + (inputs + `(("vbz-compression" ,vbz-compression))) (propagated-inputs `(("python-numpy" ,python-numpy) - ("python-six" ,python-six) ("python-h5py" ,python-h5py) + ("python-packaging" ,python-packaging) ("python-progressbar33" ,python-progressbar33))) (home-page "https://github.com/nanoporetech/ont_fast5_api") (synopsis "Interface to HDF5 files of the Oxford Nanopore fast5 file format") |