Merge branch 'master' into core-updates

1 files changed, 0 insertions, 161 deletions

diff --git a/gnu/packages/patches/avogadro-python-eigen-lib.patch b/gnu/packages/patches/avogadro-python-eigen-lib.patch
deleted file mode 100644
index ac9f2e30af..0000000000
--- a/gnu/packages/patches/avogadro-python-eigen-lib.patch
+++ /dev/null
@@ -1,161 +0,0 @@
-From 2d4be7ede177a8df7340fe3b209698d591ee8a04 Mon Sep 17 00:00:00 2001
-From: Claudio Fernandes <claudiosf.claudio@gmail.com>
-Date: Mon, 16 Jan 2017 19:48:23 -0200
-Subject: [PATCH] Adapt libavogadro/python to Eigen 3.3
-
----
- libavogadro/src/python/camera.cpp |  2 +-
- libavogadro/src/python/eigen.cpp  | 60 +++++++++++++++++++--------------------
- 2 files changed, 31 insertions(+), 31 deletions(-)
-
-diff --git a/libavogadro/src/python/camera.cpp b/libavogadro/src/python/camera.cpp
-index 69ca87bf8..30b32af7d 100644
---- a/libavogadro/src/python/camera.cpp
-+++ b/libavogadro/src/python/camera.cpp
-@@ -10,7 +10,7 @@ using namespace Avogadro;
- void export_Camera()
- {
- 
--  const Eigen::Transform3d& (Camera::*modelview_ptr)() const = &Camera::modelview;
-+  const Eigen::Projective3d& (Camera::*modelview_ptr)() const = &Camera::modelview;
-   Eigen::Vector3d (Camera::*unProject_ptr1)(const Eigen::Vector3d&) const = &Camera::unProject;
-   Eigen::Vector3d (Camera::*unProject_ptr2)(const QPoint&, const Eigen::Vector3d&) const = &Camera::unProject;
-   Eigen::Vector3d (Camera::*unProject_ptr3)(const QPoint&) const = &Camera::unProject;
-diff --git a/libavogadro/src/python/eigen.cpp b/libavogadro/src/python/eigen.cpp
-index c1faedbcc..20b4e719d 100644
---- a/libavogadro/src/python/eigen.cpp
-+++ b/libavogadro/src/python/eigen.cpp
-@@ -305,9 +305,9 @@ template <> struct ScalarTraits<double>
-     struct innerclass
-     {
-       //
--      //  Eigen::Transform3d --> python array (4x4)
-+      //  Eigen::Projective3d --> python array (4x4)
-       //
--      static PyObject* convert(Eigen::Transform3d const &trans)
-+      static PyObject* convert(Eigen::Projective3d const &trans)
-       {
-         npy_intp dims[2] = { 4, 4 };
-         PyObject *result = PyArray_SimpleNew(2, dims, PyArray_DOUBLE);
-@@ -321,9 +321,9 @@ template <> struct ScalarTraits<double>
-         return incref(result);
-       }
-       //
--      //  Eigen::Transform3d* --> python array (4x4)
-+      //  Eigen::Projective3d* --> python array (4x4)
-       //
--      static PyObject* convert(Eigen::Transform3d *trans)
-+      static PyObject* convert(Eigen::Projective3d *trans)
-       {
-         npy_intp dims[2] = { 4, 4 };
-         PyObject *result = PyArray_SimpleNew(2, dims, PyArray_DOUBLE);
-@@ -337,9 +337,9 @@ template <> struct ScalarTraits<double>
-         return incref(result);
-       }
-       //
--      //  const Eigen::Transform3d* --> python array (4x4)
-+      //  const Eigen::Projective3d* --> python array (4x4)
-       //
--      static PyObject* convert(const Eigen::Transform3d *trans)
-+      static PyObject* convert(const Eigen::Projective3d *trans)
-       {
-         npy_intp dims[2] = { 4, 4 };
-         PyObject *result = PyArray_SimpleNew(2, dims, PyArray_DOUBLE);
-@@ -358,10 +358,10 @@ template <> struct ScalarTraits<double>
-     Transform3d_to_python_array()
-     {
-       #ifndef WIN32
--      to_python_converter<Eigen::Transform3d, innerclass>();
-+      to_python_converter<Eigen::Projective3d, innerclass>();
-       #endif
--      to_python_converter<Eigen::Transform3d*, innerclass>();
--      to_python_converter<const Eigen::Transform3d*, innerclass>();
-+      to_python_converter<Eigen::Projective3d*, innerclass>();
-+      to_python_converter<const Eigen::Projective3d*, innerclass>();
-     }
- 
-   };
-@@ -373,17 +373,17 @@ template <> struct ScalarTraits<double>
-       // Insert an rvalue from_python converter at the tail of the
-       // chain. Used for implicit conversions
-       //
--      //  python array --> Eigen::Transform3d
-+      //  python array --> Eigen::Projective3d
-       //
-       // used for:
-       //
--      //  void function(Eigen::Transform3d vec)
--      //  void function(Eigen::Transform3d & vec)
--      //  void function(const Eigen::Transform3d & vec)
-+      //  void function(Eigen::Projective3d vec)
-+      //  void function(Eigen::Projective3d & vec)
-+      //  void function(const Eigen::Projective3d & vec)
-       //
--      converter::registry::push_back( &convertible, &construct, type_id<Eigen::Transform3d>() );
-+      converter::registry::push_back( &convertible, &construct, type_id<Eigen::Projective3d>() );
-       
--      converter::registry::insert( &convert, type_id<Eigen::Transform3d>() );
-+      converter::registry::insert( &convert, type_id<Eigen::Projective3d>() );
-     }
- 
-     static void* convert(PyObject *obj_ptr)
-@@ -401,7 +401,7 @@ template <> struct ScalarTraits<double>
-         throw_error_already_set(); // the 1D array does not have exactly 3 elements
- 
-       double *values = reinterpret_cast<double*>(array->data);
--      Eigen::Transform3d *c_obj = new Eigen::Transform3d();
-+      Eigen::Projective3d *c_obj = new Eigen::Projective3d();
-       double *dataPtr = c_obj->data();
- 
-       for (int i = 0; i < 16; ++i)
-@@ -432,7 +432,7 @@ template <> struct ScalarTraits<double>
-       // I think this is a better way to get at the double array, where is this
-       // deleted though? Does Boost::Python do it?
-       double *values = reinterpret_cast<double*>(array->data);
--      Eigen::Transform3d *storage = new Eigen::Transform3d();
-+      Eigen::Projective3d *storage = new Eigen::Projective3d();
-       double *dataPtr = storage->data();
- 
-       for (int i = 0; i < 16; ++i)
-@@ -467,21 +467,21 @@ class EigenUnitTestHelper
-     void set_vector3d_ptr(Eigen::Vector3d* vec)                 { m_vector3d = *vec; }
-     void set_const_vector3d_ptr(const Eigen::Vector3d* const vec) { m_vector3d = *vec; }
- 
--    //Eigen::Transform3d             transform3d()              { return m_transform3d; }
--    //Eigen::Transform3d&            transform3d_ref()          { return m_transform3d; }
--    const Eigen::Transform3d&      const_transform3d_ref()    { return m_transform3d; }
--    Eigen::Transform3d*            transform3d_ptr()          { return &m_transform3d; }
--    const Eigen::Transform3d*      const_transform3d_ptr()    { return &m_transform3d; }
--
--    //void set_transform3d(Eigen::Transform3d vec)                      { m_transform3d = vec; }
--    //void set_transform3d_ref(Eigen::Transform3d& vec)                 { m_transform3d = vec; }
--    void set_const_transform3d_ref(const Eigen::Transform3d& vec)     { m_transform3d = vec; }
--    void set_transform3d_ptr(Eigen::Transform3d* vec)                 { m_transform3d = *vec; }
--    void set_const_transform3d_ptr(const Eigen::Transform3d* const vec) { m_transform3d = *vec; }
-+    //Eigen::Projective3d             transform3d()              { return m_transform3d; }
-+    //Eigen::Projective3d&            transform3d_ref()          { return m_transform3d; }
-+    const Eigen::Projective3d&      const_transform3d_ref()    { return m_transform3d; }
-+    Eigen::Projective3d*            transform3d_ptr()          { return &m_transform3d; }
-+    const Eigen::Projective3d*      const_transform3d_ptr()    { return &m_transform3d; }
-+
-+    //void set_transform3d(Eigen::Projective3d vec)                      { m_transform3d = vec; }
-+    //void set_transform3d_ref(Eigen::Projective3d& vec)                 { m_transform3d = vec; }
-+    void set_const_transform3d_ref(const Eigen::Projective3d& vec)     { m_transform3d = vec; }
-+    void set_transform3d_ptr(Eigen::Projective3d* vec)                 { m_transform3d = *vec; }
-+    void set_const_transform3d_ptr(const Eigen::Projective3d* const vec) { m_transform3d = *vec; }
-  
-   private:
-     Eigen::Vector3d m_vector3d;
--    Eigen::Transform3d m_transform3d;
-+    Eigen::Projective3d m_transform3d;
- 
- };
- #endif
-@@ -529,6 +529,6 @@ void export_Eigen()
-   Vector3x_to_python_array<Eigen::Vector3i>();
-   Vector3x_from_python_array<Eigen::Vector3i>();
- 
--  // Eigen::Transform3d
-+  // Eigen::Projective3d
-   Transform3d_to_python_array();
-   Transform3d_from_python_array();