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| author | Ludovic Courtès <ludo@gnu.org> | 2022-06-08 14:46:24 +0200 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2022-06-08 14:46:24 +0200 |
| commit | 8c3e9da13a3c92a7db308db8c0d81cb474ad7799 (patch) | |
| tree | 88d06952aa5cc3a9c4991d9c43eb7950ff174fe1 /gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch | |
| parent | 5439c04ebdb7b6405f5ea2446b375f1d155a8d95 (diff) | |
| parent | 0c5299200ffcd16370f047b7ccb187c60f30da34 (diff) | |
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch')
| -rw-r--r-- | gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch | 33 |
1 files changed, 0 insertions, 33 deletions
diff --git a/gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch b/gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch deleted file mode 100644 index 4cce33fb01..0000000000 --- a/gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch +++ /dev/null @@ -1,33 +0,0 @@ -diff -Naur pigx_scrnaseq-1.1.7/configure.ac pigx_scrnaseq-1.1.7.patched/configure.ac ---- pigx_scrnaseq-1.1.7/configure.ac 2020-03-17 14:37:46.000000000 +0100 -+++ pigx_scrnaseq-1.1.7.patched/configure.ac 2021-10-06 13:55:49.779271317 +0200 -@@ -43,7 +43,6 @@ - find_or_override_prog([GNUBASH], [bash]) - find_or_override_prog([SNAKEMAKE], [snakemake]) - find_or_override_prog([PANDOC], [pandoc]) --find_or_override_prog([PANDOC_CITEPROC], [pandoc-citeproc]) - find_or_override_prog([FASTQC], [fastqc]) - find_or_override_prog([STAR], [STAR]) - find_or_override_prog([SAMTOOLS], [samtools]) -diff -Naur pigx_scrnaseq-1.1.7/Makefile.in pigx_scrnaseq-1.1.7.patched/Makefile.in ---- pigx_scrnaseq-1.1.7/Makefile.in 2020-11-30 16:55:48.000000000 +0100 -+++ pigx_scrnaseq-1.1.7.patched/Makefile.in 2021-10-06 13:55:52.224340194 +0200 -@@ -395,7 +395,6 @@ - PACKAGE_URL = @PACKAGE_URL@ - PACKAGE_VERSION = @PACKAGE_VERSION@ - PANDOC = @PANDOC@ --PANDOC_CITEPROC = @PANDOC_CITEPROC@ - PATH_SEPARATOR = @PATH_SEPARATOR@ - PERL = @PERL@ - PYTHON = @PYTHON@ -diff -Naur pigx_scrnaseq-1.1.7/pigx-scrnaseq.in pigx_scrnaseq-1.1.7.patched/pigx-scrnaseq.in ---- pigx_scrnaseq-1.1.7/pigx-scrnaseq.in 2020-11-30 16:08:55.000000000 +0100 -+++ pigx_scrnaseq-1.1.7.patched/pigx-scrnaseq.in 2021-10-06 13:55:47.889218079 +0200 -@@ -274,7 +274,6 @@ - if path.exists(bin): shutil.rmtree(bin) - os.makedirs(bin, exist_ok=True) - os.symlink('@PANDOC@', path.join(bin, "pandoc")) -- os.symlink('@PANDOC_CITEPROC@', path.join(bin, "pandoc-citeproc")) - os.symlink('@RSCRIPT@', path.join(bin, "Rscript")) - os.environ['PATH'] = path.abspath(bin) + ":" + os.environ['PATH'] - os.environ['PIGX_PATH'] = path.abspath(bin) + ":" + os.environ['PATH'] |