Merge branch 'master' into core-updates-frozen

1 files changed, 339 insertions, 34 deletions

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3a85266b4a..4bca271bb5 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1358,6 +1358,27 @@ concepts.")
 (define-public python2-h5py
   (package-with-python2 python-h5py))
 
+(define-public python-hnswlib
+  (package
+    (name "python-hnswlib")
+    (version "0.5.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "hnswlib" version))
+       (sha256
+        (base32 "0wf1cwmxmdzfqmfhrkqdxb5spf21ylgl2bidswhzjrqhwf35c9qf"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-numpy" ,python-numpy)))
+    (native-inputs
+     `(("pybind11" ,pybind11)))
+    (home-page "https://github.com/nmslib/hnswlib")
+    (synopsis "Fast approximate nearest neighbor search")
+    (description "Hnswlib is a header-only C++ implementation of fast
+approximate nearest neighbor search with Python bindings.")
+    (license license:asl2.0)))
+
 (define-public python-pyls-black
   (package
     (name "python-pyls-black")
@@ -1542,6 +1563,35 @@ and simplified.  It supports SPDX license expressions as well as other naming
 conventions and aliases in the same expression.")
     (license license:gpl2+)))
 
+(define-public python-wand
+  (package
+    (name "python-wand")
+    (version "0.6.7")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "Wand" version))
+       (sha256
+        (base32 "1nxn7zvbnfgk4kkxajbzglcjpbgr84ilhnxm990nifjxqb61ph7b"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'find-magickwand
+           (lambda* (#:key inputs #:allow-other-keys)
+             (setenv "MAGICK_HOME" (assoc-ref inputs "imagemagick"))
+             (setenv "WAND_MAGICK_LIBRARY_SUFFIX" ".Q16"))))))
+    (native-inputs
+     `(("python-pytest" ,python-pytest)))
+    (inputs
+     `(("imagemagick" ,imagemagick)))
+    (home-page "https://docs.wand-py.org/")
+    (synopsis "MagickWand API binding for Python")
+    (description
+     "Wand is a ctypes-based binding for the C API of ImageMagick's MagickWand
+library.")
+    (license license:expat)))
+
 (define-public python-lockfile
   (package
     (name "python-lockfile")
@@ -3351,7 +3401,7 @@ with sensible defaults out of the box.")
     (native-inputs
       `(("python-pytest-cov" ,python-pytest-cov)))
     (home-page "https://github.com/mapbox/cligj")
-    (synopsis "Click params for commmand line interfaces to GeoJSON")
+    (synopsis "Click params for command line interfaces to GeoJSON")
     (description
       "cligj is for Python developers who create command line interfaces
 for geospatial data.  cligj allows you to quickly build consistent,
@@ -6570,29 +6620,20 @@ where key might be occurred more than once in the container.")
 (define-public python-orderedmultidict
   (package
     (name "python-orderedmultidict")
-    (version "1.0")
+    (version "1.0.1")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "orderedmultidict" version))
         (sha256
           (base32
-            "1idjbl933avgaadscrjw1np3xkvnz3phq0l8vw5qs0rqcjx9b65q"))))
+            "1bc2v0yflsxjyyjx4q9wqx0j3bvzcw9z87d5pz4iqac7bsxhn1q4"))))
     (build-system python-build-system)
-    (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'fix-tests
-           (lambda _
-             ;; The package uses nosetest for running the tests.
-             ;; Adding this initfile allows to run the test suite
-             ;; without requiring nosetest.
-             (with-output-to-file "tests/__init__.py" newline)
-             #t)))))
     (propagated-inputs
      `(("python-six" ,python-six)))
     (native-inputs
-     `(("python-pycodestyle" ,python-pycodestyle)))
+     `(("python-flake8" ,python-flake8)
+       ("python-pycodestyle" ,python-pycodestyle)))
     (home-page "https://github.com/gruns/orderedmultidict")
     (synopsis "Python Ordered Multivalue Dictionary - omdict")
     (description "This package contains a library for ordered multivalue
@@ -6601,9 +6642,6 @@ multiple values for the same key.  An ordered multivalue dictionary is a
 multivalue dictionary that retains the order of insertions and deletions.")
     (license license:unlicense)))
 
-(define-public python2-orderedmultidict
-  (package-with-python2 python-orderedmultidict))
-
 (define-public python-autopep8
   (package
     (name "python-autopep8")
@@ -9623,6 +9661,56 @@ applications.")
      "PyZMQ is the official Python binding for the ZeroMQ messaging library.")
     (license license:bsd-4)))
 
+(define-public python-immutabledict
+  (package
+    (name "python-immutabledict")
+    (version "2.2.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "immutabledict" version))
+       (sha256
+        (base32 "0fpc4gbk7inpfbgdypsg6c18bmdjw8gwx47bjw0hvixn3gghxnqx"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #f)) ; no tests in PyPI release and no setup.py in GitHub
+    (native-inputs
+     `(("python-pytest" ,python-pytest)))
+    (home-page "https://github.com/corenting/immutabledict")
+    (synopsis "Immutable wrapper around dictionaries")
+    (description
+     "@dfn{immutabledict} is an immutable wrapper around dictionaries.
+It implements the complete mapping interface and can be used as a drop-in
+replacement for dictionaries where immutability is desired.")
+    (license license:expat)))
+
+(define-public python-emoji
+  (package
+    (name "python-emoji")
+    (version "1.6.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "emoji" version))
+       (sha256
+        (base32 "0923mpixwq6hdpkgvi4r46alfvf608iq975rb8lnqpq29j71mmjk"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key tests? #:allow-other-keys)
+             (when tests?
+               (invoke "python" "-m" "pytest")))))))
+    (native-inputs
+     `(("python-pytest" ,python-pytest)))
+    (home-page "https://github.com/carpedm20/emoji/")
+    (synopsis "Emoji terminal output for Python")
+    (description "This package provides Emoji terminal output for Python.  The
+entire set of Emoji codes as defined by the Unicode Consortium is supported in
+addition to a bunch of aliases.")
+    (license license:bsd-3)))
+
 (define-public python-pep8
   ;; This package has been renamed to ‘pycodestyle’ and is no longer updated.
   ;; Its last release (1.7.1) adds only a scary warning to this effect, breaking
@@ -10990,6 +11078,67 @@ your package is installed, via @code{pkg_resources} (part of
 @code{setuptools}).")
     (license license:gpl3+)))
 
+(define-public python-filetype
+  (package
+    (name "python-filetype")
+    (version "1.0.8")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "filetype" version))
+       (sha256
+        (base32 "05mkinkcn36v1cnb5hzay3zxmv7jmmflckxxp08rgzbkkf3i9pvp"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (invoke "python" "-m" "pytest" "-k"
+                       (string-append
+                        ;; Both tests fail with FileNotFoundError.
+                        "not test_infer_zip_from_disk"
+                        " and not test_infer_tar_from_disk"))))))))
+    (native-inputs
+     `(("python-pytest" ,python-pytest)
+       ("python-pytest-benchmark" ,python-pytest-benchmark)))
+    (home-page "https://github.com/h2non/filetype.py")
+    (synopsis "Infer file type and MIME type of any file/buffer")
+    (description "@code{filetype} is a small and dependency free Python
+package to infer file type and MIME type checking the magic numbers
+signature of a file or buffer.")
+    (license license:expat)))
+
+(define-public python-cachelib
+  (package
+    (name "python-cachelib")
+    (version "0.4.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "cachelib" version))
+       (sha256
+        (base32 "0p4chkvbvffcllsny5rpzmsq2vyr24ql3kzif4ha0fxp3fp7vqk8"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key tests? inputs outputs #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (invoke "pytest")))))))
+    (native-inputs
+     `(("python-pytest" ,python-pytest)
+       ("python-pytest-xprocess" ,python-pytest-xprocess)))
+    (home-page "https://github.com/pallets/cachelib")
+    (synopsis "Collection of cache libraries")
+    (description "Cachelib is a library extracted from @code{werkzeug} which
+provides a collection of cache libraries in the same API interface.")
+    (license license:bsd-3)))
+
 (define-public python-legacy-api-wrap
   (package
     (name "python-legacy-api-wrap")
@@ -11059,14 +11208,14 @@ suitable for a wide range of protocols based on the ASN.1 specification.")
 (define-public python-pyasn1-modules
   (package
     (name "python-pyasn1-modules")
-    (version "0.2.2")
+    (version "0.2.8")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "pyasn1-modules" version))
         (sha256
          (base32
-          "0ivm850yi7ajjbi8j115qpsj95bgxdsx48nbjzg0zip788c3xkx0"))))
+          "0pp6dcagd8c2c9qx3lahc1rdwlnmm0y0siqr5icjq2r32b3q8pwh"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-pyasn1" ,python-pyasn1)))
@@ -15539,7 +15688,7 @@ database, file, dict stores.  Cachy supports python versions 2.7+ and 3.2+.")
 (define-public poetry
   (package
     (name "poetry")
-    (version "1.1.5")
+    (version "1.1.11")
     ;; Poetry can only be built from source with Poetry.
     (source
      (origin
@@ -15547,7 +15696,7 @@ database, file, dict stores.  Cachy supports python versions 2.7+ and 3.2+.")
        (uri (pypi-uri "poetry" version))
        (sha256
         (base32
-         "1dvx08ksv5wnsj45db23921rj136akmcnxa0kmlsddf3wbh6wcka"))))
+         "17pnf2j4adlm9fhyg5jkkvs8bzcigb6nj72vr0687fxybzsj4zbx"))))
     (build-system python-build-system)
     (arguments
      `(#:tests? #f ;; Pypi does not have tests.
@@ -16706,9 +16855,6 @@ Glances uses the PsUtil library to get information from your system.  It
 monitors CPU, load, memory, network bandwidth, disk I/O, disk use, and more.")
   (license license:lgpl3+)))
 
-(define-public python-glances
-  (deprecated-package "python-glances" glances))
-
 (define-public python-graphql-core
   (package
     (name "python-graphql-core")
@@ -18469,13 +18615,13 @@ current test, while only declaring the test-specific fields")
 (define-public python-translate-toolkit
   (package
     (name "python-translate-toolkit")
-    (version "2.1.0")
+    (version "3.5.1")
     (source
      (origin
        (method url-fetch)
-       (uri (pypi-uri "translate-toolkit" version ".tar.bz2"))
+       (uri (pypi-uri "translate-toolkit" version ".tar.gz"))
        (sha256
-        (base32 "1vlkwrg83vb17jc36pmwh2b7jphwf390lz0jw8hakcg16qhwypvq"))))
+        (base32 "020pp7pbpnavxd41z90vyzzx06ci57mx9drkgbsb89wxxx4gal9v"))))
     (build-system python-build-system)
     (native-inputs
      `(("python-pytest" ,python-pytest)
@@ -18503,8 +18649,18 @@ current test, while only declaring the test-specific fields")
 several utilities, as well as an API for building localization tools.")
     (license license:gpl2+)))
 
+;; Required for virtaal, newer versions do not build with python2
 (define-public python2-translate-toolkit
-  (package-with-python2 python-translate-toolkit))
+  (package-with-python2
+    (package
+      (inherit python-translate-toolkit)
+      (version "2.1.0")
+      (source
+       (origin
+         (method url-fetch)
+         (uri (pypi-uri "translate-toolkit" version ".tar.bz2"))
+         (sha256
+          (base32 "1vlkwrg83vb17jc36pmwh2b7jphwf390lz0jw8hakcg16qhwypvq")))))))
 
 (define-public python-packaging
   (package/inherit python-packaging-bootstrap
@@ -19331,15 +19487,9 @@ many of the popular cloud service providers using a unified API.")
 window memory map manager.")
     (license license:bsd-3)))
 
-(define-public python-smmap2
-  (deprecated-package "python-smmap2" python-smmap))
-
 (define-public python2-smmap
   (package-with-python2 python-smmap))
 
-(define-public python2-smmap2
-  (deprecated-package "python2-smmap2" python2-smmap))
-
 (define-public python-regex
   (package
     (name "python-regex")
@@ -27164,6 +27314,137 @@ objects in the combined source, and how they define or use each other.  The
 graph can be output for rendering by GraphViz or yEd.")
     (license license:gpl2)))
 
+(define-public python-multipledispatch
+  (package
+    (name "python-multipledispatch")
+    (version "0.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "multipledispatch" version))
+       (sha256
+        (base32
+         "1slblghfjg9fdi9zpd7gmrkvfbv20nrdgnrymcnbky8bzm8i9ax7"))))
+    (build-system python-build-system)
+    (propagated-inputs `(("python-six" ,python-six)))
+    (home-page "https://github.com/mrocklin/multipledispatch/")
+    (synopsis "Multiple dispatch for Python based on pattern matching")
+    (description "This library provides an efficient mechanism for overloading
+function implementations based on the types of the arguments.")
+    (license license:bsd-3)))
+
+(define-public python-logical-unification
+  (package
+    (name "python-logical-unification")
+    (version "0.4.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "logical-unification" version))
+       (sha256
+        (base32
+         "0j57953hi7kg2rl0163vzjzsvzdyjimnklhx6idf5vaqqf1d3p1j"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-multipledispatch" ,python-multipledispatch)
+       ("python-toolz" ,python-toolz)))
+    (home-page "https://github.com/pythological/unification/")
+    (synopsis "Logical unification in Python for solving symbolic expressions")
+    (description "This library provides algorithms and data types for solving
+symbolic expressions in pure Python using the technique of logical unification.")
+    (license license:bsd-3)))
+
+(define-public python-cons
+  (package
+    (name "python-cons")
+    (version "0.4.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "cons" version))
+       (sha256
+        (base32
+         "0w9giq196wps7mbm47c4shdzs5yvwvqajqzkim2p92i51sm5qgvm"))))
+    (build-system python-build-system)
+    (native-inputs
+     `(("python-pytest" ,python-pytest-6)
+       ("python-toml" ,python-toml)))
+    (propagated-inputs
+     `(("python-logical-unification" ,python-logical-unification)))
+    (home-page "https://github.com/pythological/python-cons")
+    (synopsis "Cons cell data structures and related algorithms for Python")
+    (description
+     "This library implements algorithms and data structures for Lisp-style
+cons cells in Python.")
+    (license license:lgpl3+)))
+
+(define-public python-etuples
+  (package
+    (name "python-etuples")
+    (version "0.3.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "etuples" version))
+       (sha256
+        (base32
+         "0jhfyp177v37rl0i7wqfx7q6s5qkz027hl283d1x8d0vm3w0zqc8"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-cons" ,python-cons)
+       ("python-multipledispatch" ,python-multipledispatch)))
+    (home-page "https://github.com/pythological/etuples")
+    (synopsis "S-expressions in Python")
+    (description
+     "This library implements eval'able S-expression in Python using tuple-like objects.")
+    (license license:asl2.0)))
+
+(define-public python-minikanren
+  (package
+    (name "python-minikanren")
+    (version "1.0.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/pythological/kanren")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0g7wfj5hxalwz7k1301nsjqhjpzsif1bj6wjm2x2kavlm2ypv9jc"))))
+    (build-system python-build-system)
+    (arguments
+     '(#:phases (modify-phases %standard-phases
+                  (replace 'check
+                    (lambda* (#:key tests? #:allow-other-keys)
+                      (when tests?
+                        (invoke "python" "-m" "pytest" "-v" "tests/" "kanren/"))
+                      #t)))))
+    (native-inputs
+     `(("python-coveralls" ,python-coveralls)
+       ("python-pydocstyle" ,python-pydocstyle)
+       ("python-pytest" ,python-pytest)
+       ("python-pytest-cov" ,python-pytest-cov)
+       ("python-pylint" ,python-pylint)
+       ("python-black" ,python-black)
+       ("python-sympy" ,python-sympy)
+       ("python-versioneer" ,python-versioneer)
+       ("python-coverage" ,python-coverage)
+       ("python-pre-commit" ,python-pre-commit)))
+    (propagated-inputs
+     `(("python-toolz" ,python-toolz)
+       ("python-cons" ,python-cons)
+       ("python-multipledispatch" ,python-multipledispatch)
+       ("python-etuples" ,python-etuples)
+       ("python-logical-unification" ,python-logical-unification)))
+    (home-page "https://github.com/pythological/kanren")
+    (synopsis "Relational logic programming in pure Python")
+    (description
+     "The minikanren library provides an algorithmic core for computer algebra
+systems in Python.")
+    (license license:bsd-3)))
+
+
 (define-public date2name
   (let ((commit "6c8f37277e8ec82aa50f90b8921422be30c4e798")
         (revision "1"))
@@ -27617,3 +27898,27 @@ simple mock/record and a complete capture/replay framework.")
      "Ijson is an iterative JSON parser with standard Python iterator
 interfaces.")
     (license license:bsd-3)))
+
+(define-public python-sgmllib3k
+  (package
+    (name "python-sgmllib3k")
+    (version "1.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "sgmllib3k" version))
+       (sha256
+        (base32 "1s8jm3dgqabgf8x96931scji679qkhvczlv3qld4qxpsicfgns3q"))))
+    (build-system python-build-system)
+    ;; Requires a test.html input that is not supplied
+    (arguments
+     `(#:tests? #f))
+    (home-page "https://pypi.org/project/sgmllib3k/")
+    ;; Actual homepage seems to be down
+    ;; (home-page "https://hg.hardcoded.net/sgmllib")
+    (synopsis "Python 3 port of sgmllib")
+    (description
+     "This packages provides an unmaintained port of sgmllib to Python 3.
+It is used to parse text files formatted in @acronym{SGML,Standard Generalized
+Mark-up Language}.")
+    (license license:bsd-3)))