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authorRicardo Wurmus <rekado@elephly.net>2020-02-22 14:12:22 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-02-22 20:42:15 +0100
commit8017eb0ae8d7fee1669e909b116670da374d0ce3 (patch)
treed6537c13f6d4d2af669b34cc73df6de6f6d6acc5 /gnu/packages
parentae55cd9630f43ad974f5cdc0558cbf67b8f37c19 (diff)
gnu: r-ggm: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-ggm): Move this variable from here... * gnu/packages/bioconductor.scm (r-ggm): ...to here.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm24
-rw-r--r--gnu/packages/cran.scm23
2 files changed, 24 insertions, 23 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a6ee0253be..9546b466c4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1569,6 +1569,30 @@ expressed genes in DNA microarray experiments.")
"This package implements some simple graph handling capabilities for R.")
(license license:artistic2.0)))
+;; This is a CRAN package, but it depends on a Bioconductor package.
+(define-public r-ggm
+ (package
+ (name "r-ggm")
+ (version "2.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ggm" version))
+ (sha256
+ (base32
+ "11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di"))))
+ (properties `((upstream-name . "ggm")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-graph" ,r-graph)
+ ("r-igraph" ,r-igraph)))
+ (home-page "https://cran.r-project.org/package=ggm")
+ (synopsis "Functions for graphical Markov models")
+ (description
+ "This package provides functions and datasets for maximum likelihood
+fitting of some classes of graphical Markov models.")
+ (license license:gpl2+)))
+
(define-public r-codedepends
(package
(name "r-codedepends")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f8eb99ddda..60947c5f3f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -19965,29 +19965,6 @@ uses a trans-dimensional @dfn{Markov Chain Monte Carlo} (MCMC) approach based
on a continuous-time birth-death process.")
(license license:gpl2+)))
-(define-public r-ggm
- (package
- (name "r-ggm")
- (version "2.5")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "ggm" version))
- (sha256
- (base32
- "11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di"))))
- (properties `((upstream-name . "ggm")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-graph" ,r-graph)
- ("r-igraph" ,r-igraph)))
- (home-page "https://cran.r-project.org/package=ggm")
- (synopsis "Functions for graphical Markov models")
- (description
- "This package provides functions and datasets for maximum likelihood
-fitting of some classes of graphical Markov models.")
- (license license:gpl2+)))
-
(define-public r-d3network
(package
(name "r-d3network")