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authorzimoun <zimon.toutoune@gmail.com>2021-03-17 21:14:13 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-03-31 21:23:45 +0200
commit928221850883482f1c8c30c678a43b8a887aef3e (patch)
tree019761078d9e5b74651960d4735b9cae013e23ca /gnu/packages
parent172b85aa99e62f3b765df530f38e465c7eb4ac8d (diff)
gnu: r-absfiltergsea: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-absfiltergsea): Move this variable from here... * gnu/packages/bioconductor.scm (r-absfiltergsea): ...to here.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm28
-rw-r--r--gnu/packages/cran.scm27
2 files changed, 28 insertions, 27 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 87822419c4..3d147bcb0a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1315,6 +1315,34 @@ naming and share the same rich and consistent \"Vector API\" as much as
possible.")
(license license:artistic2.0)))
+;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor.
+(define-public r-absfiltergsea
+ (package
+ (name "r-absfiltergsea")
+ (version "1.5.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "AbsFilterGSEA" version))
+ (sha256
+ (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
+ (properties `((upstream-name . "AbsFilterGSEA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-deseq" ,r-deseq)
+ ("r-limma" ,r-limma)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)))
+ (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
+ (synopsis "Improved false positive control of gene-permuting with absolute filtering")
+ (description
+ "This package provides a function that performs gene-permuting of a gene-set
+enrichment analysis (GSEA) calculation with or without the absolute filtering.
+ Without filtering, users can perform (original) two-tailed or one-tailed
+absolute GSEA.")
+ (license license:gpl2)))
+
;; This is a CRAN package, but it depends on r-biobase from Bioconductor.
(define-public r-bisquerna
(package
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 18a614e7e4..044ad8f5bb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26618,33 +26618,6 @@ include Markov models of discrete and continuous trait evolution and constant
rate speciation and extinction.")
(license license:gpl2+)))
-(define-public r-absfiltergsea
- (package
- (name "r-absfiltergsea")
- (version "1.5.1")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "AbsFilterGSEA" version))
- (sha256
- (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
- (properties `((upstream-name . "AbsFilterGSEA")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-deseq" ,r-deseq)
- ("r-limma" ,r-limma)
- ("r-rcpp" ,r-rcpp)
- ("r-rcpparmadillo" ,r-rcpparmadillo)))
- (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
- (synopsis "Improved false positive control of gene-permuting with absolute filtering")
- (description
- "This package provides a function that performs gene-permuting of a gene-set
-enrichment analysis (GSEA) calculation with or without the absolute filtering.
- Without filtering, users can perform (original) two-tailed or one-tailed
-absolute GSEA.")
- (license license:gpl2)))
-
(define-public r-calculus
(package
(name "r-calculus")