diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2021-06-07 16:49:12 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-06-07 16:50:33 +0200 |
| commit | be067c908c90b9d9f798fdf36f744f72c884f3bd (patch) | |
| tree | 04cea9f866eb50d7ed5d16f6cd75c901f3770007 /gnu/packages | |
| parent | bb38287570f3a6a4d09d04edb02668a2ab884ec0 (diff) | |
gnu: pigx-rnaseq: Adjust to upgrade of salmon.
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase
"use-latest-salmon".
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a34b123264..206c193952 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10371,6 +10371,13 @@ once. This package provides tools to perform Drop-seq analyses.") `(#:parallel-tests? #f ; not supported #:phases (modify-phases %standard-phases + ;; See https://github.com/BIMSBbioinfo/pigx_rnaseq/issues/96 + (add-after 'unpack 'use-latest-salmon + (lambda _ + (substitute* "snakefile.py" + (("\"sa.bin\"") "\"pos.bin\"")) + (substitute* "tests/test_salmon/test_salmon_index.sh.in" + (("sa.bin") "pos.bin")))) ;; "test.sh" runs STAR, which requires excessive amounts of memory. (add-after 'unpack 'disable-resource-intensive-test (lambda _ |