diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2020-06-23 13:42:02 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-06-23 13:43:12 +0200 |
| commit | c03cefc3d8dd826c4a74abbfe2b235525dca50fb (patch) | |
| tree | 2af849b9ac202ef4574b926bd41b0858e6e847aa /gnu/packages | |
| parent | f9b3718568f00ffe06d5237761f440bcb7a28ada (diff) | |
gnu: Add r-kmer.
* gnu/packages/cran.scm (r-kmer): New variable.
Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/cran.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d07d63d429..68af10f36b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22299,3 +22299,27 @@ via Newick parenthetic text. This improves accessibility to the comprehensive range of object-specific analytical and tree-visualization functions found across a wide array of bioinformatic R packages.") (license license:gpl3))) + +(define-public r-kmer + (package + (name "r-kmer") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "kmer" version)) + (sha256 + (base32 "0jimn9r0abglwxdl1zqz0lxa99cmj6haydkxjzqfbpx9by80wnww")))) + (properties `((upstream-name . "kmer"))) + (build-system r-build-system) + (propagated-inputs + `(("r-openssl" ,r-openssl) + ("r-phylogram" ,r-phylogram) + ("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/shaunpwilkinson/kmer/") + (synopsis "Fast K-Mer counting and clustering for biological sequence analysis") + (description + "@code{r-kmer} is an R package for rapidly computing distance matrices +and clustering large sequence datasets using fast alignment-free k-mer +counting and recursive k-means partitioning.") + (license license:gpl3))) |