diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2018-07-05 00:50:28 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-07-05 00:52:31 +0200 |
| commit | 08d1a8b1381db3851330031e1309892a28345029 (patch) | |
| tree | b91eaf9b49e7832bc8b34d99f9f401ee89c02e84 /gnu | |
| parent | 137bd98353645eb502e56ce0299795be6bb9b6d3 (diff) | |
gnu: pigx-scrnaseq: Update to 0.0.6.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.6.
[arguments]: Remove "wrap-executable" phase.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 3 insertions, 13 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f2c460883e..853aa7577b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13027,7 +13027,7 @@ methylation and segmentation.") (define-public pigx-scrnaseq (package (name "pigx-scrnaseq") - (version "0.0.5") + (version "0.0.6") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_scrnaseq/" @@ -13035,24 +13035,14 @@ methylation and segmentation.") "/pigx_scrnaseq-" version ".tar.gz")) (sha256 (base32 - "0a73rilv0vnw42d5rsdq205h4f0x8j3jqv998janh4s324c6w2kj")))) + "0fvdymnka598z2ka7zk6rwrf9dq89p5lyd2y9swvyg72hn1jwjai")))) (build-system gnu-build-system) (arguments `(#:configure-flags (list (string-append "PICARDJAR=" (assoc-ref %build-inputs "java-picard") "/share/java/picard.jar") (string-append "DROPSEQJAR=" (assoc-ref %build-inputs "dropseq-tools") - "/share/java/dropseq.jar")) - #:phases - (modify-phases %standard-phases - (add-after 'install 'wrap-executable - ;; Make sure the executable finds all R modules. - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (wrap-program (string-append out "/bin/pigx-scrnaseq") - `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE"))) - `("PYTHONPATH" ":" = (,(getenv "PYTHONPATH"))))) - #t))))) + "/share/java/dropseq.jar")))) (inputs `(("coreutils" ,coreutils) ("perl" ,perl) |