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| author | Roel Janssen <roel@gnu.org> | 2020-11-18 16:25:46 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-12-09 12:12:21 +0100 |
| commit | 3b399e514f55d2a9700a64f86462e071b5bb993d (patch) | |
| tree | 7a881193289bc0c592a17037417d7b465bb6635c /gnu | |
| parent | a0df9b93ef6777fc549f102c703f307512618995 (diff) | |
gnu: Add r-apeglm.
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 482a930586..56d8036899 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1630,6 +1630,33 @@ for numerical computing (numerical integration, optimization, etc.) and their integration with @code{Rcpp}.") (license license:gpl2+))) +(define-public r-apeglm + (package + (name "r-apeglm") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "apeglm" version)) + (sha256 + (base32 + "0pix1fhxk2q89p2745fgsmxwics9rf10l392qhw3rw6v6ynhims2")))) + (properties `((upstream-name . "apeglm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-emdbook" ,r-emdbook) + ("r-genomicranges" ,r-genomicranges) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rcppnumerical" ,r-rcppnumerical) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/apeglm") + (synopsis "Approximate posterior estimation for GLM coefficients") + (description "This package provides Bayesian shrinkage estimators for +effect sizes for a variety of GLM models, using approximation of the +posterior for individual coefficients.") + (license license:gpl2))) + (define-public r-diffbind (package (name "r-diffbind") |