diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2021-11-04 22:04:09 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-11-07 22:34:41 +0000 |
| commit | 442a35502678c50acdf37fec875b5103d9f2bd8b (patch) | |
| tree | 62d80344ff7b89d70f9e887307538eb13a56533c /gnu | |
| parent | c3d9b4b0979d99d07599d3738ddfb78fca018fa1 (diff) | |
gnu: r-systempiper: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
[propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, r-deseq2, r-dot,
r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
r-biocgenerics and r-htmlwidgets.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 5 insertions, 19 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b7b1b6ae9a..f04e96c23a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4442,44 +4442,30 @@ unmodeled, or latent sources of noise.") (define-public r-systempiper (package (name "r-systempiper") - (version "1.26.3") + (version "2.0.0") (source (origin (method url-fetch) (uri (bioconductor-uri "systemPipeR" version)) (sha256 (base32 - "01l35l5zj87qkarrbal9la6kshk3j7k8hy3iimv3gdnnz4axmvs7")))) + "0kibr47z7ml13hpl955qcr4wp2z4nq7gjiinyk30wivrwrng5sg1")))) (properties `((upstream-name . "systemPipeR"))) (build-system r-build-system) (propagated-inputs - `(("r-annotate" ,r-annotate) - ("r-assertthat" ,r-assertthat) - ("r-batchtools" ,r-batchtools) + `(("r-biocgenerics" ,r-biocgenerics) ("r-biostrings" ,r-biostrings) ("r-crayon" ,r-crayon) - ("r-deseq2" ,r-deseq2) - ("r-dot" ,r-dot) - ("r-edger" ,r-edger) - ("r-genomicfeatures" ,r-genomicfeatures) ("r-genomicranges" ,r-genomicranges) ("r-ggplot2" ,r-ggplot2) - ("r-go-db" ,r-go-db) - ("r-gostats" ,r-gostats) - ("r-iranges" ,r-iranges) - ("r-limma" ,r-limma) + ("r-htmlwidgets" ,r-htmlwidgets) ("r-magrittr" ,r-magrittr) - ("r-pheatmap" ,r-pheatmap) - ("r-rjson" ,r-rjson) ("r-rsamtools" ,r-rsamtools) - ("r-rsvg" ,r-rsvg) ("r-s4vectors" ,r-s4vectors) ("r-shortread" ,r-shortread) ("r-stringr" ,r-stringr) ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-testthat" ,r-testthat) - ("r-yaml" ,r-yaml) - ("r-variantannotation" ,r-variantannotation))) + ("r-yaml" ,r-yaml))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tgirke/systemPipeR") |