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authorRicardo Wurmus <rekado@elephly.net>2019-09-15 20:53:27 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-09-15 20:53:27 +0200
commit4ca2d6c1a6e64d7f64410d752140cec3063b9eca (patch)
tree4e8b48658a101df2e44640193369cae1ed77b0f6 /gnu
parent5094aa94724fd2111dbd7520ab2f21a4218523ae (diff)
gnu: Add r-affycontam.
* gnu/packages/bioconductor.scm (r-affycontam): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 83f8343524..37a3b776e9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1030,6 +1030,31 @@ provides access to @dfn{GeneChip Operating System} (GCOS) and @dfn{GeneChip
Command Console} (AGCC)-compatible sample annotation files.")
(license license:artistic2.0)))
+(define-public r-affycontam
+ (package
+ (name "r-affycontam")
+ (version "1.42.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "affyContam" version))
+ (sha256
+ (base32
+ "0nzk1cm26rhmym753wyhn35hqnz5lvavi3i5qfgdvhxgjy3m1jgp"))))
+ (properties `((upstream-name . "affyContam")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-affy" ,r-affy)
+ ("r-affydata" ,r-affydata)
+ ("r-biobase" ,r-biobase)))
+ (home-page "https://bioconductor.org/packages/affyContam/")
+ (synopsis "Structured corruption of Affymetrix CEL file data")
+ (description
+ "Microarray quality assessment is a major concern of microarray analysts.
+This package provides some simple approaches to in silico creation of quality
+problems in CEL-level data to help evaluate performance of quality metrics.")
+ (license license:artistic2.0)))
+
(define-public r-annotate
(package
(name "r-annotate")