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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2023-04-21 10:16:36 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-04-21 12:56:38 +0200
commit51ef858c941cd648362a1e98ebeb98bed35cd857 (patch)
tree51d61b28d47d1c38e2c55b1fd701394e4d63b981 /gnu
parent7cfc226d1e8a3393559efe2f95fb7d8c50e534fc (diff)
gnu: bpp-core: Update to 2.4.1.
* gnu/packages/bioinformatics.scm (bpp-core): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github stored sources. [arguments]: Remove the disabled parallel-build. [home-page]: Changed to new host Université Claude-Bernard Lyon 1.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm42
1 files changed, 18 insertions, 24 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b27e12a5b4..351387fb06 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2220,34 +2220,28 @@ easy-to-perform steps.")
(license license:gpl3+)))
(define-public bpp-core
- ;; The last release was in 2014 and the recommended way to install from source
- ;; is to clone the git repository, so we do this.
- ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
- (let ((commit "7d8bced0d1a87291ea8dd7046b7fb5ff9c35c582"))
- (package
- (name "bpp-core")
- (version (string-append "2.2.0-1." (string-take commit 7)))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "http://biopp.univ-montp2.fr/git/bpp-core")
- (commit commit)))
- (file-name (string-append name "-" version "-checkout"))
- (sha256
- (base32
- "10djsq5vlnkilv436gnmh4irpk49v29pa69r6xiryg32xmvn909j"))))
- (build-system cmake-build-system)
- (arguments
- `(#:parallel-build? #f))
- (home-page "http://biopp.univ-montp2.fr")
- (synopsis "C++ libraries for Bioinformatics")
- (description
- "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
+ (package
+ (name "bpp-core")
+ (version "2.4.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/BioPP/bpp-core")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0ma2cl677l7s0n5sffh66cy9lxp5wycm50f121g8rx85p95vkgwv"))))
+ (build-system cmake-build-system)
+ (home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-core/html/index.html")
+ (synopsis "C++ libraries for Bioinformatics")
+ (description
+ "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. It is
Object Oriented and is designed to be both easy to use and computer efficient.
Bio++ intends to help programmers to write computer expensive programs, by
providing them a set of re-usable tools.")
- (license license:cecill-c))))
+ (license license:cecill-c)))
(define-public bpp-phyl
;; The last release was in 2014 and the recommended way to install from source