diff options
| author | nafkhamdc <navid.afkhami@mdc-berlin.de> | 2024-01-11 11:20:43 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-12 12:41:18 +0100 |
| commit | 5960c3cdc40a2cd905479d3abeef01dbaf26f3a7 (patch) | |
| tree | 44993c5546910cb203840326b02b22c96f6a1c89 /gnu | |
| parent | 40f5a3ce437083e4f259878735c2c55f41708e81 (diff) | |
gnu: Add r-azimuth.
* gnu/packages/bioinformatics.scm (r-azimuth): New variable.
Change-Id: I2b0d087378028663ee8d76ced8950f7a9721cb03
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 59 |
1 files changed, 59 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f574fea0e9..f75254ed9f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11171,6 +11171,65 @@ single-cell data.") "This package is designed to streamline scATAC analyses in R.") (license license:gpl2+)))) +(define-public r-azimuth + (let ((commit "243ee5db80fcbffa3452c944254a325a3da2ef9e") + (revision "1")) + (package + (name "r-azimuth") + (version (git-version "0.5.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/satijalab/azimuth") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0vs4813kf2cv2j1z800ihwk62bw4dgmwgkd47rln58581chv39zm")))) + (properties `((upstream-name . "Azimuth"))) + (build-system r-build-system) + (propagated-inputs (list r-bsgenome-hsapiens-ucsc-hg38 + r-dt + r-ensdb-hsapiens-v86 + r-future + r-ggplot2 + r-glmgampoi + r-googlesheets4 + r-hdf5r + r-htmltools + r-httr + r-jaspar2020 + r-jsonlite + r-matrix + r-patchwork + r-plotly + r-presto + r-rcpp + r-rlang + r-scales + r-seurat + r-seuratdata + r-seuratdisk + r-seuratobject + r-shiny + r-shinybs + r-shinydashboard + r-shinyjs + r-signac + r-stringr + r-tfbstools + r-withr)) + (home-page "https://github.com/satijalab/azimuth") + (synopsis + "Shiny app showcasing a single-cell data query-reference mapping algorithm") + (description "Azimuth utilizes an annotated reference dataset. It +automates the processing, analysis, and interpretation. This applies +specifically to new single-cell RNA-seq or ATAC-seq experiments. Azimuth +leverages a reference-based mapping pipeline that inputs acounts matrix and +performs normalization, visualization, cell annotation, and differential +expression.") + (license license:gpl3)))) + (define-public r-icellnet ;; v1.0 tagged in 2020, last commit contains many fixes. ;; DESCRIPTION says Version: 0.0.0.9000. |