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| author | Efraim Flashner <efraim@flashner.co.il> | 2019-12-04 10:57:15 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2019-12-10 13:11:44 +0200 |
| commit | 5a4aab219317c7423c48f26540719d86ff41c9c5 (patch) | |
| tree | 3379f246d3c0bde6da6ff1914e5151515fa7b2ba /gnu | |
| parent | db6982e4e2609bc63c5eea6e385e434a1478cafa (diff) | |
gnu: Add r-qtl2.
* gnu/packages/bioinformatics.scm (r-qtl2): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 74a44874ee..bdb3ff761b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8239,6 +8239,35 @@ identify genotyping errors, and to perform single-QTL and two-QTL, two-dimensional genome scans.") (license license:gpl3))) +(define-public r-qtl2 + (package + (name "r-qtl2") + (version "0.20") + (source (origin + (method git-fetch) + ;; Not yet available in cran. + (uri (git-reference + (url "https://github.com/rqtl/qtl2.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0")))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-jsonlite" ,r-jsonlite) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rsqlite" ,r-rsqlite) + ("r-yaml" ,r-yaml))) + (home-page "https://kbroman.org/qtl2/") + (synopsis + "QTL analysis software for high-dimensional data and complex cross designs") + (description + "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software +R/qtl, to better handle high-dimensional data and complex cross designs.") + (license license:gpl3))) + (define-public r-zlibbioc (package (name "r-zlibbioc") |