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authorRicardo Wurmus <rekado@elephly.net>2020-11-30 22:32:35 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-11-30 22:39:34 +0100
commit80fbad4fe655df72212045bb4f5f0b43a8e7734e (patch)
tree118d970c241c70fe5c1beb41ba299f700760f833 /gnu
parentd3c1b5f66dbee892cecb70148f74efa8492116f2 (diff)
gnu: pigx-chipseq: Update to 0.0.51.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.51. [inputs]: Add r-corrplot, r-deseq2, r-dt, r-ggrepel, r-gprofiler2, r-pheatmap, and r-rsubread.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm23
1 files changed, 15 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5ae50ffddb..477715b9b2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12681,7 +12681,7 @@ expression report comparing samples in an easily configurable manner.")
(define-public pigx-chipseq
(package
(name "pigx-chipseq")
- (version "0.0.43")
+ (version "0.0.51")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/"
@@ -12689,7 +12689,7 @@ expression report comparing samples in an easily configurable manner.")
"/pigx_chipseq-" version ".tar.gz"))
(sha256
(base32
- "0426i31b7mqqkbss5dgrvf5prkj4z1qrd7yrpd27vybs01xhdlks"))))
+ "0bb6hzpl0qq0jd57pgd1m5ns547rfipr6071a4m12vxlm4nlpi5q"))))
(build-system gnu-build-system)
;; parts of the tests rely on access to the network
(arguments '(#:tests? #f))
@@ -12701,23 +12701,30 @@ expression report comparing samples in an easily configurable manner.")
("r-biocparallel" ,r-biocparallel)
("r-biostrings" ,r-biostrings)
("r-chipseq" ,r-chipseq)
+ ("r-corrplot" ,r-corrplot)
("r-data-table" ,r-data-table)
+ ("r-deseq2" ,r-deseq2)
("r-dplyr" ,r-dplyr)
+ ("r-dt" ,r-dt)
("r-genomation" ,r-genomation)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-ggrepel" ,r-ggrepel)
+ ("r-gprofiler2" ,r-gprofiler2)
+ ("r-heatmaply" ,r-heatmaply)
+ ("r-htmlwidgets" ,r-htmlwidgets)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-pheatmap" ,r-pheatmap)
+ ("r-plotly" ,r-plotly)
+ ("r-rmarkdown" ,r-rmarkdown)
("r-rsamtools" ,r-rsamtools)
+ ("r-rsubread" ,r-rsubread)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
- ("r-jsonlite" ,r-jsonlite)
- ("r-heatmaply" ,r-heatmaply)
- ("r-htmlwidgets" ,r-htmlwidgets)
- ("r-ggplot2" ,r-ggplot2)
- ("r-plotly" ,r-plotly)
- ("r-rmarkdown" ,r-rmarkdown)
("python-wrapper" ,python-wrapper)
("python-pyyaml" ,python-pyyaml)
("python-magic" ,python-magic)