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authorMaxim Cournoyer <maxim.cournoyer@gmail.com>2022-04-29 13:36:16 -0400
committerMaxim Cournoyer <maxim.cournoyer@gmail.com>2022-05-31 14:52:19 -0400
commitc30ab2c0b4d506c559cd35a21c1cadac65014f1a (patch)
treef2bc68360ba709f852a63c4165878bd466cd80ad /gnu
parentba09192168ec7683e7a4456480b740892a797ad1 (diff)
gnu: Remove pyicoteo.
* gnu/packages/bioinformatics.scm (pyicoteo): Delete variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm39
1 files changed, 0 insertions, 39 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 735b1e5eea..40c060b2dc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5406,45 +5406,6 @@ clusters them to find significant groups. The algorithm was designed to handle
large-scale data and can be applied to hundreds of species at once.")
(license license:gpl3+)))
-(define-public pyicoteo
- (package
- (name "pyicoteo")
- (version "2.0.7")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://bitbucket.org/regulatorygenomicsupf/pyicoteo.git")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0hz5g8d25lbjy1wpscr490l0lmyvaix893hhax4fxnh1h9w34w8p"))))
- (build-system python-build-system)
- (arguments
- `(#:python ,python-2 ; does not work with Python 3
- #:tests? #f)) ; there are no tests
- (inputs
- (list python2-matplotlib))
- (home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo")
- (synopsis "Analyze high-throughput genetic sequencing data")
- (description
- "Pyicoteo is a suite of tools for the analysis of high-throughput genetic
-sequencing data. It works with genomic coordinates. There are currently six
-different command-line tools:
-
-@enumerate
-@item pyicoregion: for generating exploratory regions automatically;
-@item pyicoenrich: for differential enrichment between two conditions;
-@item pyicoclip: for calling CLIP-Seq peaks without a control;
-@item pyicos: for genomic coordinates manipulation;
-@item pyicoller: for peak calling on punctuated ChIP-Seq;
-@item pyicount: to count how many reads from N experiment files overlap in a
- region file;
-@item pyicotrocol: to combine operations from pyicoteo.
-@end enumerate\n")
- (license license:gpl3+)))
-
(define-public prodigal
(package
(name "prodigal")