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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-07-19 14:59:11 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-07-19 15:29:14 +0200 |
| commit | c5f9e435da652179aa70f8c6c9cabdbb02cf0728 (patch) | |
| tree | e2d27dabbb41e6d0c716cdf4861ad220e2ef2b8b /gnu | |
| parent | f77216721e20f471f7989590422c595f80d70534 (diff) | |
gnu: Add r-singscore.
* gnu/packages/bioconductor.scm (r-singscore): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 69c054e4c7..c7f99d82b4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9306,6 +9306,44 @@ this package. It also provides functionalities for visualizing, summarizing and comparing the clusterings.") (license license:expat))) +(define-public r-singscore + (package + (name "r-singscore") + (version "1.20.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "singscore" version)) + (sha256 + (base32 + "1s1kyvkbfgwskf0hi4b44c2yx256rjp1yk9ijpld9qlm7z7pi67q")))) + (properties `((upstream-name . "singscore"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase + r-biocparallel + r-edger + r-ggplot2 + r-ggrepel + r-gseabase + r-magrittr + r-matrixstats + r-plotly + r-plyr + r-rcolorbrewer + r-reshape + r-reshape2 + r-s4vectors + r-summarizedexperiment + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://davislaboratory.github.io/singscore/") + (synopsis "Rank-based single-sample gene set scoring method") + (description + "This package provides a simple single-sample gene signature scoring +method that uses rank-based statistics to analyze the sample's gene expression +profile. It scores the expression activities of gene sets at a single-sample +level.") + (license license:gpl3))) + (define-public r-tkwidgets (package (name "r-tkwidgets") |