diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 56 |
1 files changed, 24 insertions, 32 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 152cef2e01..8813bbe308 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2367,40 +2367,32 @@ It is part of the Bio++ project.") (license license:cecill))) (define-public bppsuite - ;; The last release was in 2014 and the recommended way to install from source - ;; is to clone the git repository, so we do this. - ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page - (let ((commit "c516147f57aa50961121cd505bed52cd7603698b")) - (package - (name "bppsuite") - (version (string-append "2.2.0-1." (string-take commit 7))) - (source (origin - (method git-fetch) - (uri (git-reference - (url "http://biopp.univ-montp2.fr/git/bppsuite") - (commit commit))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "1y87pxvw0jxjizhq2dr9g2r91md45k1p9ih2sl1yy1y3p934l2kb")))) - (build-system cmake-build-system) - (arguments - `(#:parallel-build? #f - #:tests? #f)) ; There are no tests. - (native-inputs - (list groff man-db texinfo)) - (inputs - `(("bpp-core" ,bpp-core) - ("bpp-seq" ,bpp-seq) - ("bpp-phyl" ,bpp-phyl) - ("bpp-phyl" ,bpp-popgen))) - (home-page "http://biopp.univ-montp2.fr") - (synopsis "Bioinformatics tools written with the Bio++ libraries") - (description - "Bio++ is a set of C++ libraries for Bioinformatics, including sequence + (package + (name "bppsuite") + (version "2.4.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BioPP/bppsuite") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1wdwcgczqbc3m116vakvi0129wm3acln3cfc7ivqnalwvi6lrpds")))) + (build-system cmake-build-system) + (arguments + (list #:tests? #f)) ; There are no tests. + (native-inputs + (list groff man-db texinfo)) + (inputs + (list bpp-core bpp-seq bpp-phyl bpp-popgen)) + (home-page "https://github.com/BioPP") + (synopsis "Bioinformatics tools written with the Bio++ libraries") + (description + "Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. This package provides command line tools using the Bio++ library.") - (license license:cecill-c)))) + (license license:cecill-c))) (define-public blast+ (package |