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-rw-r--r--gnu/packages/bioinformatics.scm22
1 files changed, 10 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4eef211b86..09a4efeadf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16571,36 +16571,34 @@ million cells.")
(define-public python-bbknn
(package
(name "python-bbknn")
- (version "1.5.1")
+ (version "1.6.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "bbknn" version))
(sha256
(base32
- "0q11xdmjr2kf6f179a6kjizj3lllfrq743gslgw67qyzimvrrnhn"))))
- (build-system python-build-system)
+ "06q43cpi7wi6f2d2jqs8f9rbd94pg1hh7978gm92mi9gvzbaj08w"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:tests? #f ; no tests are included
- #:phases
- (modify-phases %standard-phases
+ (list
+ #:tests? #f ;no tests are included
+ #:phases
+ '(modify-phases %standard-phases
;; Numba needs a writable dir to cache functions.
(add-before 'check 'set-numba-cache-dir
(lambda _
- (setenv "NUMBA_CACHE_DIR" "/tmp")))
- (add-after 'unpack 'do-not-fail-to-find-sklearn
- (lambda _
- ;; XXX: I have no idea why it cannot seem to find sklearn.
- (substitute* "setup.py"
- (("'sklearn'") "")))))))
+ (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
(propagated-inputs
(list python-annoy
python-cython
python-numpy
python-pandas
+ python-pynndescent
python-scikit-learn
python-scipy
python-umap-learn))
+ (native-inputs (list python-flit-core))
(home-page "https://github.com/Teichlab/bbknn")
(synopsis "Batch balanced KNN")
(description "BBKNN is a batch effect removal tool that can be directly