diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4e8b92841c..a98971e294 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8972,6 +8972,40 @@ scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.") (license license:gpl2))) +(define-public r-motifmatchr + (package + (name "r-motifmatchr") + (version "1.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "motifmatchr" version)) + (sha256 + (base32 + "0zrpn0hqdg0hm80ydkfpiqncwyb8y0xp6mlin7g955p8zcpcm67z")))) + (properties `((upstream-name . "motifmatchr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rsamtools" ,r-rsamtools) + ("r-s4vectors" ,r-s4vectors) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-tfbstools" ,r-tfbstools))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/motifmatchr") + (synopsis "Fast motif matching in R") + (description + "Quickly find motif matches for many motifs and many sequences. +This package wraps C++ code from the MOODS motif calling library.") + (license license:gpl3))) + (define-public r-singlecellexperiment (package (name "r-singlecellexperiment") |