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| -rw-r--r-- | gnu/packages/bioconductor.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 15173e1659..dfc43acc95 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2047,3 +2047,39 @@ detected features, features length, etc. It also supports the analysis of differential expression between two experimental conditions with no parametric assumptions.") (license license:artistic2.0))) + +(define-public r-scdd + (package + (name "r-scdd") + (version "1.6.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "scDD" version)) + (sha256 + (base32 + "0dp2awajd5281dwpbs0wb8ij2pq9l60p0b80xhxrb41m5qybcri8")))) + (properties `((upstream-name . "scDD"))) + (build-system r-build-system) + (propagated-inputs + `(("r-arm" ,r-arm) + ("r-biocparallel" ,r-biocparallel) + ("r-ebseq" ,r-ebseq) + ("r-fields" ,r-fields) + ("r-ggplot2" ,r-ggplot2) + ("r-mclust" ,r-mclust) + ("r-outliers" ,r-outliers) + ("r-s4vectors" ,r-s4vectors) + ("r-scran" ,r-scran) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (home-page "https://github.com/kdkorthauer/scDD") + (synopsis "Mixture modeling of single-cell RNA-seq data") + (description + "This package implements a method to analyze single-cell RNA-seq data +utilizing flexible Dirichlet Process mixture models. Genes with differential +distributions of expression are classified into several interesting patterns +of differences between two conditions. The package also includes functions +for simulating data with these patterns from negative binomial +distributions.") + (license license:gpl2))) |