diff options
| -rw-r--r-- | gnu/packages/cran.scm | 50 |
1 files changed, 19 insertions, 31 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2aa0067950..43bc7906af 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -26954,44 +26954,32 @@ dataset-specific factors.") (define-public r-harmony (package (name "r-harmony") - (version "0.1") + (version "1.2.0") (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/immunogenomics/harmony") - (commit version))) - (file-name (git-file-name name version)) + (method url-fetch) + (uri (cran-uri "harmony" version)) (sha256 - (base32 - "05r401q09rbr6fqhb9mbd95082cjdi3nag1cv6zn96xkr0f6imq9")) - (modules '((guix build utils))) - (snippet - '(begin - (for-each delete-file '("config.status" "configure")) - #t)))) + (base32 "1df7bb9ba3m0c44fhmh8cs4hlkh4fffjwm8rz7l87lf5pdy7sg56")))) + (properties `((upstream-name . "harmony"))) (build-system r-build-system) - (propagated-inputs - (list r-cowplot - r-dplyr - r-ggplot2 - r-irlba - r-matrix - r-rcpp - r-rcpparmadillo - r-rcppprogress - r-rlang - r-tibble - r-tidyr)) - (native-inputs - (list autoconf)) - (home-page "https://github.com/immunogenomics/harmony") + (propagated-inputs (list r-cowplot + r-dplyr + r-ggplot2 + r-matrix + r-rcpp + r-rcpparmadillo + r-rcppprogress + r-rhpcblasctl + r-rlang + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/web/packages/harmony/index.html") (synopsis "Integration of single cell sequencing data") (description "This package provides an implementation of the Harmony algorithm for -single cell integration, described in Korsunsky et al -@url{doi.org/10.1101/461954}. The package includes a standalone Harmony -function and interfaces to external frameworks.") +single cell integration. This package includes a standalone Harmony function +and interfaces to external frameworks.") (license license:gpl3))) (define-public r-covr |