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Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 5c377a7d59..46278d326c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4708,6 +4708,35 @@ and the assessment of differential expression. The analysis methods apply to different technologies, including microarrays, RNA-seq, and quantitative PCR.") (license license:gpl2+))) +(define-public r-made4 + (package + (name "r-made4") + (version "1.70.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "made4" version)) + (sha256 + (base32 + "1wrv9d2mp799qzy1bsaj4w7wx12gdhfv9qvklz7z41vfz59d6bq5")))) + (properties `((upstream-name . "made4"))) + (build-system r-build-system) + (propagated-inputs + (list r-ade4 + r-biobase + r-gplots + r-rcolorbrewer + r-scatterplot3d + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "http://www.hsph.harvard.edu/aedin-culhane/") + (synopsis "Multivariate analysis of microarray data using ADE4") + (description + "This is a package for multivariate data analysis and graphical display +of microarray data. Functions are included for supervised dimension +reduction (between group analysis) and joint dimension reduction of two +datasets (coinertia analysis).") + (license license:artistic2.0))) + (define-public r-methylkit (package (name "r-methylkit") @@ -16759,6 +16788,25 @@ with a nested autoregressive correlated error structure for the effect of interest on transformed methylation proportions.") (license license:expat))) +(define-public r-omicade4 + (package + (name "r-omicade4") + (version "1.36.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "omicade4" version)) + (sha256 + (base32 + "1l7w3sczsimg640klq8navgdcwjj090wjqd40n4mw76pny2xj2lj")))) + (properties `((upstream-name . "omicade4"))) + (build-system r-build-system) + (propagated-inputs (list r-ade4 r-biobase r-made4)) + (home-page "https://bioconductor.org/packages/omicade4") + (synopsis "Multiple co-inertia analysis of omics datasets") + (description + "This package performes multiple co-inertia analysis of omics datasets.") + (license license:gpl2))) + (define-public r-omnipathr (package (name "r-omnipathr") |