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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f6a7222f8d..07da3c49b3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8767,6 +8767,33 @@ arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).") (license license:lgpl2.0+))) +(define-public r-quantsmooth + (package + (name "r-quantsmooth") + (version "1.64.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "quantsmooth" version)) + (sha256 + (base32 "1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp")))) + (properties `((upstream-name . "quantsmooth"))) + (build-system r-build-system) + (propagated-inputs (list r-quantreg)) + (home-page "https://bioconductor.org/packages/quantsmooth") + (synopsis "Quantile smoothing and genomic visualization of array data") + (description + "This package implements quantile smoothing. It contains a dataset used +to produce human chromosomal ideograms for plotting purposes and a collection +of arrays that contains data of chromosome 14 of 3 colorectal tumors. The +package provides functions for painting chromosomal icons, chromosome or +chromosomal idiogram and other types of plots. Quantsmooth offers options +like converting chromosomal ids to their numeric form, retrieving the human +chromosomal length from NCBI data, retrieving regions of interest in a vector +of intensities using quantile smoothing, determining cytoband position based +on the location of the probe, and other useful tools.") + (license license:gpl2))) + (define-public r-qvalue (package (name "r-qvalue") |