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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4cbffac000..90a0e1f288 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7331,6 +7331,37 @@ specified group of genes for a pathway has a coordinated association with a phenotype of interest.") (license license:gpl2))) +(define-public r-fcscan + (package + (name "r-fcscan") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "fcScan" version)) + (sha256 + (base32 "10fcz741dr3wbb9f63qywlrays4cnvfnsm6yw4bmkrwk6ccijg8h")))) + (properties `((upstream-name . "fcScan"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-plyr" ,r-plyr) + ("r-rtracklayer" ,r-rtracklayer) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-variantannotation" ,r-variantannotation))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/fcScan") + (synopsis "Detect clusters of coordinates with user defined options") + (description + "This package is used to detect combination of genomic coordinates +falling within a user defined window size along with user defined overlap +between identified neighboring clusters. It can be used for genomic data +where the clusters are built on a specific chromosome or specific strand. +Clustering can be performed with a \"greedy\" option allowing thus the +presence of additional sites within the allowed window size.") + (license license:artistic2.0))) + (define-public r-fgsea (package (name "r-fgsea") |