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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2f2a60ad19..98a2da21c9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5024,3 +5024,44 @@ with separating information will be identified, and these clusters are defined by a sparse number of variables, this method can reduce the complexity of data, to only emphasize the data that actually matters.") (license license:expat))) + +(define-public r-cicero + (package + (name "r-cicero") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "cicero" version)) + (sha256 + (base32 + "0f15l8zrh7l7nnvznb66116hvfk15djb9q240vbscm2w0y5fvkcr")))) + (build-system r-build-system) + (propagated-inputs + `(("r-assertthat" ,r-assertthat) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-fnn" ,r-fnn) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-glasso" ,r-glasso) + ("r-gviz" ,r-gviz) + ("r-igraph" ,r-igraph) + ("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-monocle" ,r-monocle) + ("r-plyr" ,r-plyr) + ("r-reshape2" ,r-reshape2) + ("r-s4vectors" ,r-s4vectors) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-vgam" ,r-vgam))) + (home-page "https://bioconductor.org/packages/cicero/") + (synopsis "Predict cis-co-accessibility from single-cell data") + (description + "Cicero computes putative cis-regulatory maps from single-cell chromatin +accessibility data. It also extends the monocle package for use in chromatin +accessibility data.") + (license license:expat))) |